[1] ANWAR Z,GULFRAZ M,IRSHAD M.Agro-industrial lignocellulosic biomass a key to unlock the future bio-energy:a brief review[J].Journal of Radiation Research and Applied Sciences,2014,7(2):163-173.
[2] FERREIRA J A,MAHBOUBI A,LENNARTSSON P R,et al.Waste biorefineries using filamentous ascomycetes fungi:present status and future prospects[J].Bioresource Technology,2016,215:334-345.
[3] GROΒKOPF T,SOYER O S.Synthetic microbial communities[J].Current Opinion in Microbiology,2014,18:72-77.
[4] 许从峰,艾士奇,申贵男,等.木质纤维素的微生物降解[J].生物工程学报,2019,35(11):2081-2091.
[5] 丁立孝,张青,孙琴,等.瘤胃厌氧真菌对木质纤维素降解的研究进展[J].畜牧与饲料科学,2010,31(1):16-19.
[6] 王超,刘国道.瘤胃微生物降解纤维素的研究进展[J].安徽农业科学,2007,35(13):3771-3772,3799.
[7] 陈富荣,朱雅新,东秀珠,等.瘤胃木质纤维素降解菌及降解酶基因的研究进展[J].微生物学报,2010,50(8):981-987.
[8] WEIMER P J.Redundancy,resilience,and host specificity of the ruminal microbiota:implications for engineering improved ruminal fermentations[J].Frontiers in Microbiology,2015,6:296.
[9] 盖叶顶,王后福,王淑玲,等.瘤胃微生物宏组学分析及研究进展[J/OL].中国畜牧杂志,2019,1(10).(2019-10-10)[2019-10-31].https://doi.org/10.19556/j.0258-7033.20190531-02.
[10] 黄青云.畜牧微生物学[M].北京:中国农业出版社,2009.
[11] ARNTZEN M Ø,VÁRNAI A,MACKIE R I,et al.Outer membrane vesicles from
Fibrobacter succinogenes S85 contain an array of carbohydrate-active enzymes with versatile polysaccharide-grading capacity[J].Environmental Microbiology,2017,19(7):2701-2714.
[12] XU Q,MORRISON M,NELSON K E,et al.A novel family of carbohydrate-binding modules identified with
Ruminococcus albus proteins[J].The FEBS Letters,2004,566(1/2/3):11-16.
[13] MORAÏS S,MIZRAHI I.Islands in the stream:from individual to communal fiber degradation in the rumen ecosystem[J].FEMS Microbiology Reviews,2019,43(4):362-379.
[14] ARTZI L,BAYER E A,MORAÏS S.Cellulosomes:bacterial nanomachines for dismantling plant polysaccharides[J].Nature Reviews Microbiology,2017,15(2):83-95.
[15] EZER A,MATALON E,JINDOU S,et al.Cell surface enzyme attachment is mediated by family 37 carbohydrate-binding modules,unique to
Ruminococcus albus[J].Journal of Bacteriology,2008,190(24):8220-8222.
[16] BENSOUSSAN L Z,MORAÏS S,DASSA B,et al.Broad phylogeny and functionality of cellulosomal components in the bovine rumen microbiome[J].Environmental Microbiology,2017,19(1):185-197.
[17] DASSA B,BOROVOK I,RUIMY-ISRAELI V,et al.Rumen cellulosomics:divergent fiber-degrading strategies revealed by comparative genome-wide analysis of six ruminococcal strains[J].PLoS One,2014,9(7):e99221.
[18] ISRAELI-RUIMY V,BULE P,JINDOU S,et al.Complexity of the
Ruminococcus flavefaciens FD-1 cellulosome reflects an expansion of family-related protein-protein interactions[J].Scientific Reports,2017,7:42355.
[19] MILLER M E B,ANTONOPOULOS D A,RINCON M T,,et al.Diversity and strain specificity of plant cell wall degrading enzymes revealed by the draft genome of
Ruminococcus flavefaciens FD-1[J].Plos One,2009,4(8):e6650.
[20] MILLER M E B,ANTONOPOULOS D A,RINCON M T,et al.Diversity and strain specificity of plant cell wall degrading enzymes revealed by the draft genome of
Ruminococcus flavefaciens FD-1[J].PLoS One,2009,4(8):e6650.
[21] SUEN G,WEIMER P J,STEVENSON D M,et al.The complete genome sequence of
Fibrobacter succinogenes S85 reveals a cellulolytic and metabolic specialist[J].PLoS One,2011,6(4):e18814.
[22] BURNET M C,DOHNALKOVA A C,NEUMANN A P,et al.Evaluating models of cellulose degradation by
Fibrobacter succinogenes S85[J].PLoS One,2015,10(12):e0143809.
[23] KOBAYASHI Y,SHINKAI T,KOIKE S.Ecological and physiological characterization shows that
Fibrobacter succinogenes is important in rumen fiber digestion-review[J].Folia Microbiologica,2008,53(3):195-200.
[24] DEHORITY B A.Rumen Microbiology[M].Nottingham:Nottingham University Press,2003.
[25] AKIN D E,BORNEMAN W S.Role of rumen fungi in fiber degradation[J].Journal of Dairy Science,1990,73(10):3023-3032.
[26] FLIEGEROVA K,KAERGER K,KIRK P,et al.Rumen fungi[M]//PUNIYA A K,SINGH R,KAMRA D N.Rumen microbiology:from evolution to revolution.New Delhi:Springer,2015:97-112.
[27] HAITJEMA C H,GILMORE S P,HENSKE J K,et al.A parts list for fungal cellulosomes revealed by comparative genomics[J].Nature Microbiology,2017,2:17087.
[28] 雷威,苏建明,章怀云.瘤胃厌氧真菌纤维素酶的研究进展[J].畜牧与饲料科学,2005,26(3):12-14.
[29] LYND K R,WEIME P J,VAN ZYL W H,et al.Microbial cellulose utilization:fundamentals and biotechnology[J].Microbiology and Molecular Biology Reviews,2002,66(3):506-577.
[30] LOMBARD V,RAMULU H G,DRULA E,et al.The carbohydrate-active enzymes database (CAZy) in 2013[J].Nucleic Acids Research,2014,42(D1):D490-D495.
[31] FLINT H J,BAYER E A,RINCON M T,et al.Polysaccharide utilization by gut bacteria:potential for new insights from genomic analysis[J].Nature Reviews Microbiology,2008,6(2):121-131.
[32] LIN L L,THOMSON J A.Cloning,sequencing and expression of a gene encoding a 73 kDa xylanase enzyme from the rumen anaerobe
Butyrivibrio fibrisolvens H17c[J].Molecular and General Genetics MGG,1991,228(1):55-61.
[33] YOSHIDA S,MACKIE R I,CANN I K.Biochemical and domain analyses of FSUAxe6B,a modular acetyl xylan esterase,identify a unique carbohydrate binding module in
Fibrobacter succinogenes S85[J].Journal of Bacteriology,2010,192(2):483-493.
[34] JAMI E,MIZRAHI I.Composition and similarity of bovine rumen microbiota across individual animals[J].PLoS One,2012,7(3):e33306.
[35] AVGUŠTIN G,FLINT H J,WHITEHEAD T R.Distribution of xylanase genes and enzymes among strains of
Prevotella (
Bacteroides) ruminicola from the rumen[J].FEMS Microbiology Letters,1992,78(7/8):137-143.
[36] SESHADRI R,LEAHY S C,ATTWOOD G T,et al.Cultivation and sequencing of rumen microbiome members from the Hungate1000 collection[J].Nature Biotechnology,2018,36(4):359-367.
[37] AARTI C,ARASU M V,AGASTIAN P.Lignin degradation:a microbial approach[J].South Indian Journal of Biological Sciences,2015,1(3):119-127.
[38] 邢岩.降解木质素厌氧菌株筛选及其转化秸秆作用研究[D].硕士学位论文.长春:吉林大学,2012.
[39] 许浩.水牛瘤胃对不同木质素单体组成粗饲料中纤维降解的研究[D].硕士学位论文.武汉:华中农业大学,2017.
[40] 朱宁.木质纤维素降解酶系在草本类生物质上的协作机制[D].博士学位论文.北京:中国农业大学,2016.
[41] MENON V,RAO M L.Trends in bioconversion of lignocellulose:biofuels,platform chemicals & biorefinery concept[J].Progress in Energy and Combustion Science,2012,38(4):522-550.
[42] WANG G R,DUAN Y L.Studies on lignocellulose degradation by rumen microorganism[J].Advanced Materials Research,2013,853:253-259.
[43] HUH J H,KIM D J,ZHAO X Q,et al.Widespread activation of antibiotic biosynthesis by S-adenosylmethionine in
Streptomycetes[J].FEMS Microbiology Letters,2004,238(2):439-447.
[44] 高巍.瘤胃微生物对植物细胞壁降解的相对贡献及其附着与降解的关系研究[D].博士学位论文.北京:中国农业大学,2004.
[45] LEE S S,HA J K,CHENG K J.Relative contributions of bacteria,protozoa,and fungi to
in vitro degradation of orchard grass cell walls and their interactions[J].Applied and Environmental Microbiology,2000,66(9):3807-3813.
[46] NEWBOLD C J,DE LA FUENTE G,BELANCHE A,et al.The role of ciliate protozoa in the rumen[J].Frontiers in Microbiology,2015,6:1313.
[47] BERNALIER A G,FONTY F,BONNEMOY F,et al.Inhibition of the cellulolytic activity of
Neocallimastix frontalis by
Ruminococcus flavefaciens[J].Journal of General Microbiology,1993,139(4):873-880.
[48] ROGER V,FONTY G,KOMISARCZUK-BONY S,et al.Effects of physicochemical factors on the adhesion to cellulose avicel of the ruminal bacteria
Ruminococcus flavefaciens and
Fibrobacter succinogenes subsp.
succinogenes[J].Applied and Environmental Microbiology,1990,56(10):3081-3087.
[49] MOSONI P,FONTY G,GOUET P.Competition between ruminal cellulolytic bacteria for adhesion to cellulose[J].Current Microbiology,1997,35(1):44-47.
[50] EMERSON E L,WEIMER P J.Fermentation of model hemicelluloses by
Prevotella strains and
Butyrivibrio fibrisolvens in pure culture and in ruminal enrichment cultures[J].Applied Microbiology Biotechnology,2017,101(10):4269-4278.
[51] DEMANÈCHE S,DAVID M M,NAVARRO E,et al.Evaluation of functional gene enrichment in a soil metagenomic clone library[J].Journal of Microbiological Methods,2009,76(1):105-107.
[52] GILBERT J A,DUPONT C L.Microbial metagenomics:beyond the genome[J].Annual Review of Marine Science,2011,3:347-371.
[53] HESS M,SCZYRBA A,EGAN R,et al.Metagenomic discovery of biomass-degrading genes and genomes from cow rumen[J].Science,2011,331(6016):463-467.
[54] DAI X,ZHU Y X,LUO Y F,et al.Metagenomic insights into the fibrolytic microbiome in yak rumen[J].PLoS One,2012,7(7):e40430.
[55] UFARTÉ L,POTOCKI-VERONESE G,CECCHINI D,et al.Highly promiscuous oxidases discovered in the bovine rumen microbiome[J].Frontiers in Microbiology,2018,9:861.
[56] COMTET-MARRE S,CHAUCHEYRAS-DURAND F,BOUZID O,et al.FibroChip,a functional DNA microarray to monitor cellulolytic and hemicellulolytic activities of rumen microbiota[J].Frontiers in Microbiology,2018,9:215.
[57] 田彦.基于高通量测序的中国荷斯坦奶牛瘤胃宏转录组研究[D].博士学位论文.北京:中国科学院北京基因组研究所,2015.
[58] EMERSON J B,ADAMS R I,ROMÁN C M B,et al.Schrödinger's microbes:tools for distinguishing the living from the dead in microbial ecosystems[J].Microbiome,2017,5:86.
[59] SOREK R,COSSART P.Prokaryotic transcriptomics:a new view on regulation,physiology and pathogenicity[J].Nature Reviews Genetics,2010,11(1):9-16.
[60] MARX I J,VAN WYK N,SMIT S,et al.Comparative secretome analysis of
Trichoderma asperellum S4F8 and
Trichoderma reesei Rut C30 during solid-state fermentation on sugarcane bagasse[J].Biotechnology for Biofuels,2013,6:172.
[61] ADAV S S,CHEOW E S H,RAVINDRAN A,et al.Label free quantitative proteomic analysis of secretome by
Thermobifida fusca on different lignocellulosic biomass[J].Journal of Proteomics,2012,75(12):3694-3706.
[62] DEUSCH S,CAMARINHA-SILVA A,CONRAD J,et al.A structural and functional elucidation of the rumen microbiome influenced by various diets and microenvironments[J].Frontiers in Microbiology,2017,8:1605.
[63] SNELLING T J,WALLACE R J.The rumen microbial metaproteome as revealed by SDS-PAGE[J].BMC Microbiology,2017,17:9.
[64] 谢骁,孙会增,刘建新.宏组学在哺乳动物消化道微生物研究中的应用[J].现代牧业,2017,1(1):1-8.
[65] HASSA J,MAUS I,OFF S,et al.Metagenome,metatranscriptome,and metaproteome approaches unraveled compositions and functional relationships of microbial communities residing in biogas plants[J].Applied Microbiology and Biotechnology,2018,102(12):5045-5063.
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