1 材料与方法
1.1 试验设计和样品采集
1.2 检测小鼠血清ALT和AST活性
1.3 肝脏病理组织学观察
1.4 肝脏组织中炎症因子含量的测定
1.5 肝脏组织RNA提取和转录组测序
1.6 GO功能和KEGG信号通路富集分析
1.7 实时荧光定量PCR(RT-qPCR)验证
表1 实时荧光定量PCR引物序列Table 1 Primer sequences for RT-qPCR |
| 基因名称 Gene names | 正向引物 Forward primers (5'—3') | 反向引物 Reverse primers (5'—3') | 产物大小 Product size/bp |
|---|---|---|---|
| GAPDH | CCAGGGCTGCTTTTAACTCTG | GTGGGTGGAATCATACTGGAACAT | 104 |
| CYP7B1 | CCCTGCGTGACGAAATTGAC | TCGAACCTAAATTCCCAGGCA | 98 |
| ANGPTL8 | GTCGGAGATTCAGGTGGAAGA | CCTCTCAGCTGCACTTGTAGT | 102 |
| ADORA1 | GATCCTTGTGGAGTGCTGG | AAGGCAATGAGCACCTCGAT | 118 |
| PLIN4 | CCCTGCGTGACGAAATTGAC | TCGAACCTAAATTCCCAGGCA | 82 |
| CPT1B | CCCTGCGTGACGAAATTGAC | TCGAACCTAAATTCCCAGGCA | 109 |
GAPDH:磷酸甘油醛脱氢酶 glyceraldehyde phosphate dehydrogenase;CYP7B1:细胞色素P450家族7亚家族B成员1 cytochrome P450 family 7 subfamily B member 1;ANGPTL8:血管生成素样蛋白-8 angiopoietin-like 8;ADORA1:腺苷A1受体 adenosine A1 receptor;PLIN4:脂蛋白4 perilipin 4;CPT1B:肉毒碱脂酰转移酶1B carnitine palmitoyltransferase 1B。 |
1.8 统计分析
2 结果与分析
2.1 丁酸梭菌预处理对小鼠体重、结肠长度、肝脏重量和脾脏重量的影响
2.2 丁酸梭菌预处理对小鼠血清ALT和AST活性的影响
2.3 丁酸梭菌预处理对小鼠肝脏组织形态和炎症因子含量的影响
2.4 肝脏组织中差异表达基因分析
图6 小鼠肝脏组织中差异表达基因分析(CB组 vs. DSS组)Fig.6 Analysis of differential expressed genes in liver tissue of mice (CB group vs. DSS group) A:主坐标分析图 principal coordinates analysis plot;B:基因总表达量火山图 Volcano plot of total expression of genes。 CB1~CB5为CB组中5只小鼠的代号,DSS1~DSS5为DSS组中5只小鼠的代号。图7同。CB1 to CB5 are the code names of five mice in CB group, and DSS1 to DSS5 are the code names of five mice in DSS group. The same as Fig.7 |
2.5 肝脏组织中差异表达基因的GO功能和KEGG信号通路富集分析
2.6 差异表达基因分析及其与炎症因子的相关性分析
图10 差异表达基因和炎症因子的相关性分析KRT14:角蛋白14 keratin 14;ALDH3A1:醛脱氢酶3家族成员A1 aldehyde dehydrogenase 3 family member A1;KRT13:角蛋白13 keratin 13;CPT1B:肉毒碱脂酰转移酶1B carnitine palmitoyltransferase 1B;OSBPL5:氧固醇结合蛋白样5 oxysterol binding protein like 5;ADORA1:腺苷A1受体 adenosine A1 receptor;PLIN4:脂蛋白4 perilipin 4;NAT8F6:N-乙酰基转移酶(与GCN5有关)家庭成员6 N-acetyltransferase 8 (GCN5-related) family member 6;ANGPTL8:血管生成素样蛋白-8 angiopoietin-like 8;CYP7B1:细胞色素P450家族7亚家族B成员1 cytochrome P450 family 7 subfamily B member 1;GSTM2:谷胱甘肽S-转移酶mu 2 glutathione S-transferase mu 2;IL-6:白细胞介素-6 interleukin-6;IL-1β:白细胞介素-1β interleukin-1β;TNF-α:肿瘤坏死因子-α tumor necrosis factor-α。 “*”和“**”分别表示相关性显著(P<0.05)和极显著(P<0.01)。“*” and “**” showed that the correlation is significant (P<0.05) and extremely significant (P<0.01), respectively. Fig.10 Correlation analysis of differential expressed genes and inflammatory factors |
表2 GO显著富集条目及其相关基因的调节(CB组 vs. DSS组)Table 2 Regulation of GO significant enrichment terms and their associated genes (CB group vs. DSS group) |
| 条目ID Term ID | 描述 Description | P值 P-value | 上调基因 Up- regulated genes | 下调基因 Down- regulated genes |
|---|---|---|---|---|
| GO:0033783 | 羟基胆固醇7α-羟化酶活性 25-hydroxycholesterol 7alpha-hydroxylase activity | 0.002 375 616 | CYP7B1 | |
| GO:0047092 | 羟基胆固醇7α-单加氧酶活性 27-hydroxycholesterol 7alpha monooxygenase activity | 0.002 375 616 | CYP7B1 | |
| GO:0070328 | 甘油三酯稳态 Triglyceride homeostasis | 0.003 133 372 | ANGPTL8 | ADORA1 |
| GO:0050873 | 棕色脂肪细胞分化 Brown fat cell differentiation | 0.003 133 372 | MB | FFAR4 |
CYP7B1:细胞色素P450家族7亚家族B成员1 cytochrome P450 family 7 subfamily B member 1;ANGPTL8:血管生成素样蛋白8 angiopoietin-like 8;ADORA1:腺苷A1受体 adenosine A1 receptor;MB:肌红蛋白 myoglobin;FFAR4:游离脂肪酸受体4 free fatty acid receptor 4。 |
表3 KEGG显著富集通路及其相关的基因调节(CB组 vs. DSS组)Table 3 Regulation of KEGG significant enrichment pathways and their associated genes (CB group vs. DSS group) |
| 路径ID Pathway ID | 描述 Description | P值 P-value | 上调基因 Up- regulated genes | 下调基因 Down- regulated genes |
|---|---|---|---|---|
| mmu04979 | 胆固醇代谢 Cholesterol metabolism | 0.007 099 220 | ANGPTL8 | OSBPL5 |
| mmu00480 | 谷胱甘肽代谢 Glutathione metabolism | 0.012 607 058 | NAT8F6、GSTM2 | |
| mmu00980 | 细胞色素P450对外来生物的代谢 Metabolism of xenobiotics by cytochrome P450 | 0.013 346 734 | GSTM2 | ALDH3A1 |
| mmu00982 | 药物代谢-细胞色素P450 Drug metabolism-cytochrome P450 | 0.014 105 016 | GSTM2 | ALDH3A1 |
| mmu03320 | 过氧化物酶体增殖物激活受体信号通路 PPAR signaling pathway | 0.020 365 674 | CPT1B、PLIN4 | |
| mmu05204 | 化学致癌-DNA加合物 Chemical carcinogenesis-DNA adducts | 0.025 568 674 | GSTM2 | ALDH3A1 |
| mmu00120 | 初级胆汁酸生物合成 Primary bile acid biosynthesis | 0.040 983 987 | CYP7B1 | |
| mmu04915 | 雌激素信号通路 Estrogen signaling pathway | 0.047 718 706 | KRT13、KRT14 |
ANGPTL8:血管生成素样蛋白8 angiopoietin-like 8;OSBPL5:氧固醇结合蛋白样5 oxysterol binding protein like 5;NAT8F6:N-乙酰基转移酶8(与GCN5有关)家庭成员6 N-acetyltransferase 8 (GCN5-related) family member 6;GSTM2:谷胱甘肽S-转移酶mu 2 glutathione S-transferase mu 2;ALDH3A1:醛脱氢酶3家族成员A1 aldehyde dehydrogenase 3 family member A1;CPT1B:肉毒碱脂酰转移酶1B carnitine palmitoyltransferase 1B;PLIN4:脂蛋白4 perilipin 4;CYP7B1:细胞色素P450家族7亚家族B成员1 cytochrome P450 family 7 subfamily B member 1;KRT13:角蛋白13 keratin 13;KRT14:角蛋白14 keratin 14。 |
2.7 差异表达基因的RT-qPCR验证
图11 差异表达基因的RT-qPCR验证(CB组 vs. DSS组)CYP7B1:细胞色素P450家族7亚家族B成员1 cytochrome P450 family 7 subfamily B member 1;ANGPTL8:血管生成素样蛋白8 angiopoietin-like 8;ADORA1:腺苷A1受体 adenosine A1 receptor;PLIN4:脂蛋白4 perilipin 4;CPT1B:肉毒碱脂酰转移酶1B Carnitine palmitoyltransferase 1B。 Fig.11 RT-qPCR verification of differential expressed genes (CB group vs. DSS group) |

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