1 材料与方法
1.1 试验设计
1.2 试验饲粮
表1 饲粮组成及营养水平(干物质基础)Table 1 Composition and nutrient levels of diets (DM basis) % |
| 项目 Items | 对照组 Control group | 2%组 2% group | 4%组 4% group | 8%组 8% group |
|---|---|---|---|---|
| 原料Ingredients | ||||
| 玉米Corn | 41.88 | 39.96 | 38.03 | 38.10 |
| 麸皮Wheat bran | 9.80 | 9.80 | 9.80 | 9.80 |
| 豆粕Soybean meal | 10.78 | 10.78 | 10.78 | 10.78 |
| 棉籽粕Cottonseed meal | 7.84 | 7.84 | 7.84 | 7.84 |
| 玉米秸秆Corn straw | 13.90 | 13.90 | 13.90 | 13.90 |
| 百里香Thyme | 2.00 | 4.00 | 8.00 | |
| 苜蓿干草Alfalfa hay | 9.90 | 9.90 | 9.90 | 5.93 |
| 燕麦草Oat grass | 3.00 | 3.00 | 3.00 | 3.00 |
| 磷酸氢钙CaHPO4 | 0.45 | 0.45 | 0.45 | 0.45 |
| 石粉Limestone | 1.47 | 1.39 | 1.32 | 1.23 |
| 预混料Premix1) | 0.98 | 0.98 | 0.98 | 0.98 |
| 合计Total | 100.00 | 100.00 | 100.00 | 100.00 |
| 营养水平Nutrient levels2) | ||||
| 代谢能ME/(MJ/kg) | 10.37 | 10.32 | 10.27 | 10.36 |
| 粗蛋白质CP | 14.70 | 14.73 | 14.75 | 14.69 |
| 钙Ca | 0.92 | 0.92 | 0.92 | 0.90 |
| 磷P | 0.51 | 0.51 | 0.51 | 0.50 |
| 中性洗涤纤维NDF | 19.51 | 20.35 | 21.19 | 21.84 |
1) 每千克预混料含有 One kg of premix contained the following: VA 1 600 000 IU, VD 2 100 000 IU, VE 500 mg, Mn 650 mg, Se 6 mg, Zn 2 500 mg, Fe 2 700 mg, I 13 mg, Co 9 mg。 2)代谢能为计算值,其余营养水平为实测值。ME was a calculated value, while the rest of the nutrient levels were measured values. |
1.3 饲养管理
1.4 测定指标及方法
1.4.1 生长性能
1.4.2 屠宰性能
1.4.3 瘤胃液的采集和处理
1.5 数据处理与分析
2 结果与分析
2.1 饲粮中添加百里香对滩羊生长性能的影响
表2 饲粮中添加百里香对滩羊生长性能的影响Table 2 Effects of dietary supplementation of thyme on growth performance of Tan sheep |
| 项目 Items | 对照组 Control group | 2%组 2% group | 4%组 4% group | 8%组 8% group | SEM | P值 P-value |
|---|---|---|---|---|---|---|
| 初始体重IBW/kg | 28.02±1.07 | 29.20±1.28 | 27.83±1.30 | 27.68±0.88 | 0.25 | 0.12 |
| 终末体重FBW/kg | 41.26±3.28 | 41.96±2.50 | 41.27±1.77 | 41.59±2.18 | 0.48 | 0.96 |
| 总增重TG/kg | 13.25±3.40 | 12.76±2.50 | 13.44±1.87 | 13.90±1.87 | 0.48 | 0.85 |
| 平均日增重ADG/(g/d) | 220.75±56.68 | 212.67±41.64 | 223.92±31.22 | 231.69±31.12 | 8.03 | 0.88 |
| 平均日采食量ADFI/(g/d) | 1 546.06±103.42 | 1 546.60±103.34 | 1 549.72±98.70 | 1 508.69±86.44 | 6.58 | 0.09 |
| 料重比F/G | 7.00±0.47b | 7.27±0.48c | 6.92±0.44b | 6.51±0.37a | 0.03 | <0.01 |
同行数据肩标不同小写字母表示差异显著(P<0.05)。下表同。 | |
In the same row, values with different small letter superscripts mean significant difference (P<0.05). The same as below. |
2.2 饲粮中添加百里香对滩羊屠宰性能的影响
表3 饲粮中添加百里香对滩羊屠宰性能的影响Table 3 Effects of dietary supplementation of thyme on slaughter performance of Tan sheep |
| 项目 Items | 对照组 Control group | 2%组 2% group | 4%组 4% group | 8%组 8% group | SEM | P值 P-value |
|---|---|---|---|---|---|---|
| 宰前活重 Live weight before slaughter/kg | 42.46±3.28 | 43.16±2.50 | 42.53±1.77 | 42.91±2.18 | 0.48 | 0.96 |
| 胴体重 Carcass weight/kg | 20.22±1.61 | 21.17±1.38 | 20.97±1.49 | 21.43±0.87 | 0.28 | 0.47 |
| 屠宰率 Dressing percentage/% | 52.92±1.42 | 53.40±2.34 | 53.91±4.30 | 54.03±2.87 | 0.56 | 0.91 |
| GR值GR value/mm | 15.69±2.42 | 18.30±4.05 | 16.27±2.70 | 14.36±4.03 | 0.71 | 0.27 |
| 背膘厚度Backfat thickness/mm | 5.67±1.87 | 6.31±2.30 | 6.35±1.10 | 6.02±2.33 | 0.37 | 0.93 |
2.3 饲粮中添加百里香对滩羊瘤胃菌群结构的影响
2.3.1 操作分类单元(OTUs)聚类分析
2.3.2 Alpha多样性指数稀释曲线分析
2.3.3 微生物群落Alpha多样性分析
表4 Alpha多样性指数Table 4 Alpha diversity index |
| 项目 Items | 对照组 Control group | 2%组 2% group | 4%组 4% group | 8%组 8% group | SEM | P值 P-value |
|---|---|---|---|---|---|---|
| Sobs指数Sobs index | 891.50±158.71 | 873.17±250.86 | 980.17±184.11 | 959.83±195.79 | 39.24 | 0.75 |
| Shannon指数Shannon index | 4.62±0.44 | 4.50±0.63 | 4.68±0.29 | 4.57±0.48 | 0.09 | 0.91 |
| Simpson指数Simpson index | 0.04±0.04 | 0.05±0.04 | 0.04±0.02 | 0.05±0.04 | 0.01 | 0.85 |
| Ace指数Ace index | 1 191.19±261.87 | 1 082.76±324.63 | 1 285.17±163.02 | 1 296.55±301.16 | 54.41 | 0.50 |
| Chao指数Chao index | 1 147.34±226.39 | 1 039.03±294.09 | 1 196.66±159.78 | 1 247.12±274.21 | 49.17 | 0.51 |
| 覆盖率Coverage | 0.988 8±0.003 0 | 0.990 6±0.003 0 | 0.988 3±0.002 0 | 0.987 0±0.003 0 | 0.00 | 0.32 |
2.3.4 瘤胃菌群主坐标分析(PCoA)
2.3.5 细菌组成与菌群结构分析
2.3.5.1 门水平结构分析
表5 饲粮中添加百里香对滩羊瘤胃菌群门水平相对丰度的影响Table 5 Effects of dietary supplementation of thyme on relative abundance of rumen microflora at phylum level of Tan sheep % |
| 项目 Items | 对照组 Control group | 2%组 2% group | 4%组 4% group | 8%组 8% group | SEM | P值 P-value |
|---|---|---|---|---|---|---|
| 厚壁菌门Firmicutes | 48.15±13.00 | 56.72±18.43 | 38.03±14.00 | 48.17±10.19 | 3.04 | 0.19 |
| 拟杆菌门Bacteroidota | 44.28±11.43 | 35.88±19.34 | 56.77±14.12 | 46.05±11.30 | 3.15 | 0.13 |
| 放线菌门Actinobacteriota | 0.92±0.74 | 1.21±0.79 | 0.92±0.89 | 0.90±0.72 | 0.15 | 0.88 |
| 互养菌门Synergistota | 0.72±0.67 | 1.69±1.43 | 0.62±0.54 | 1.48±1.19 | 0.54 | 0.75 |
| Patescibacteria | 1.46±1.19 | 0.84±0.59 | 0.46±0.18 | 0.53±0.27 | 0.24 | 0.45 |
| 未分类菌门 Unclassified_k_norank_d-bacteria | 0.39±0.28 | 0.26±0.16 | 0.43±0.35 | 0.30±0.22 | 0.11 | 0.77 |
| 螺旋菌门Spirochaetota | 0.65±0.41 | 0.67±0.42 | 1.11±1.06 | 0.50±0.43 | 0.13 | 0.41 |
| 绿屈挠菌门Chloroflexi | 0.37±0.16 | 0.56±0.47 | 0.38±0.31 | 0.75±0.57 | 0.08 | 0.62 |
| 变形菌门Proteobacteria | 0.28±0.23 | 0.34±0.17 | 0.11±0.01 | 0.39±0.11 | 0.14 | 0.83 |
| 疣微菌门Verrucomicrobiota | 0.51±0.29 | 0.48±0.29 | 0.34±0.28 | 0.41±0.34 | 0.06 | 0.76 |
| 脱硫菌门Desulfobacterota | 0.16±0.12a | 0.12±0.10a | 0.39±0.23b | 0.19±0.14a | 0.04 | 0.04 |
| 蓝藻门Cyanobacteria | 0.43±0.26 | 0.29±0.13 | 0.11±0.09 | 0.21±0.20 | 0.04 | 0.19 |
| 梭杆菌门Fusobacteriota | 0.13±0.11 | 0.02±0.02 | 0.00±0.00 | 0.24±0.20 | 0.04 | 0.29 |
| 丝状杆菌门Fibrobacterota | 0.01±0.01a | 0.05±0.04b | 0.02±0.01a | 0.02±0.02a | 0.01 | 0.03 |
| 迷踪菌门Elusimicrobiota | 0.02±0.01 | 0.05±0.05 | 0.01±0.02 | 0.02±0.03 | 0.01 | 0.55 |
| 浮霉菌门Planctomycetota | 0.06±0.05 | 0.01±0.00 | 0.00±0.00 | 0.01±0.01 | 0.01 | 0.10 |
| WPS-2 | 0.08±0.08 | 0.00±0.00 | 0.00±0.01 | 0.00±0.00 | 0.01 | 0.12 |
2.3.5.2 属水平结构分析
表6 饲粮中添加百里香对滩羊瘤胃菌群属水平相对丰度的影响Table 6 Effects of dietary supplementation of thyme on relative abundance of rumen microflora at genus level of Tan sheep % |
| 项目 Items | 对照组 Control group | 2%组 2% group | 4%组 4% group | 8%组 8% group | SEM | P值 P-value |
|---|---|---|---|---|---|---|
| 普雷沃氏菌属Prevotella | 18.05±6.41 | 14.23±8.79 | 27.38±11.83 | 16.49±2.42 | 2.23 | 0.17 |
| 瘤胃球菌属Ruminococcus | 4.51±1.60 | 4.55±3.67 | 1.50±0.85 | 5.66±1.58 | 0.63 | 0.10 |
| 克里斯滕森菌科R-7群 Christensenellaceae_R-7_group | 2.61±1.23 | 2.52±0.42 | 2.63±0.91 | 3.73±1.34 | 0.27 | 0.34 |
| 理研菌科_RC9_肠道群 Rikenellaceae_RC9_gut_group | 5.79±4.00a | 8.52±8.10b | 11.15±3.29b | 7.11±3.26ab | 0.83 | 0.03 |
| Norank_f_F082 | 2.69±0.64 | 4.67±3.69 | 3.29±3.04 | 3.12±0.89 | 0.58 | 0.70 |
| Norank_f_Muribaculaceae | 3.15±1.65 | 2.39±1.89 | 3.32±2.77 | 3.25±2.53 | 0.51 | 0.93 |
| 依赖杆菌属Fretibacterium | 0.05±0.05 | 0.72±0.52 | 0.24±0.19 | 0.09±0.06 | 0.52 | 0.38 |
| 未排位真杆菌群 Norank_f_Eubacterium_ coprostanoligenes_group | 2.55±1.10 | 2.23±0.21 | 1.61±0.37 | 1.84±1.21 | 0.21 | 0.44 |
| 毛螺菌科_NK3A20_群 Lachnospiraceae_ NK3A20_group | 1.66±0.56a | 0.88±0.40a | 0.57±0.17a | 4.82±2.45b | 0.53 | <0.01 |
| 0.01NK4A214_group | 1.22±0.70 | 1.60±1.26 | 1.11±0.32 | 2.69±2.21 | 0.26 | 0.08 |
| Family_XIII_AD3011_group | 1.35±0.75 | 1.16±0.87 | 1.55±0.22 | 1.93±1.06 | 0.19 | 0.57 |
| 奎因氏菌属Quinella | 0.79±0.51 | 2.27±1.09 | 0.19±0.18 | 0.45±0.42 | 0.25 | 0.41 |
| 艰难杆菌属Mogibacterium | 2.24±1.75 | 0.41±0.30 | 0.98±0.28 | 1.76±0.90 | 0.29 | 0.10 |
| UCG-002 | 2.67±1.54 | 1.63±1.13 | 1.32±1.25 | 0.54±0.46 | 0.33 | 0.13 |
| 普雷沃氏菌科_UCG-003 Prevotellaceae_UCG-003 | 1.19±0.90 | 1.23±0.90 | 1.48±0.37 | 0.77±0.42 | 0.17 | 0.57 |
| 普雷沃氏菌科_UCG-001 Prevotellaceae_UCG-001 | 2.40±1.50 | 1.73±0.97 | 1.26±0.27 | 1.04±0.42 | 0.25 | 0.22 |
| SP3-e08 | 0.27±0.20 | 0.26±0.19 | 0.62±0.53 | 0.54±0.32 | 0.09 | 0.35 |
| 产乙酸糖发酵菌属 Saccharofermentans | 3.19±2.79 | 2.16±1.72 | 0.75±0.15 | 0.67±0.07 | 0.46 | 0.15 |
| 毛螺菌科_ND3007群 Lachnospiraceae_ND3007_group | 0.58±0.57 | 0.39±0.20 | 0.73±0.70 | 1.05±0.88 | 0.14 | 0.72 |
| 聚乙酸菌属 Acetitomaculum | 0.75±0.55 | 0.63±0.23 | 0.40±0.15 | 0.99±0.65 | 0.11 | 0.35 |
| 高氏瘤胃球菌群 Ruminococcus_gauvreauii_group | 0.56±0.52 | 0.45±0.34 | 0.53±0.22 | 0.35±0.33 | 0.09 | 0.84 |
| 欧陆森氏菌属Olsenella | 0.15±0.13 | 0.10±0.05 | 0.11±0.04 | 0.22±0.12 | 0.02 | 0.25 |
| Norank_f_p-2534-18B5_ gut_group | 1.41±1.01 | 0.11±0.11 | 0.52±0.49 | 0.55±0.53 | 0.19 | 0.07 |
| 假丝酵母菌属 Candidatus_Saccharimonas | 1.21±0.51 | 0.99±0.58 | 0.50±0.21 | 0.64±0.18 | 0.12 | 0.11 |
| 毛螺菌科_XPB1014_群 Lachnospiraceae_XPB1014_group | 0.75±0.73 | 0.41±0.39 | 0.48±0.42 | 0.15±0.09 | 0.12 | 0.38 |
| 未分类梭菌属 Unclassified_Clostridia | 0.56±0.30 | 0.96±0.81 | 0.51±0.41 | 0.78±0.32 | 0.12 | 0.59 |
| 未排位瘤胃球菌科 Norank_f_Ruminococcaceae | 1.40±0.93 | 1.10±1.09 | 0.33±0.19 | 0.78±0.78 | 0.21 | 0.34 |
| 双歧杆菌菌属 Bifidobacterium | 0.03±0.03 | 0.01±0.01 | 0.01±0.01 | 0.00±0.00 | 0.00 | 0.12 |
图6 滩羊瘤胃菌群属水平相对丰度的柱形图Prevotella:普雷沃氏菌属;Rikenellaceae_RC9_gut_group:理研菌科_RC9_肠道群;Ruminococcus:瘤胃球菌属;Christensenellaceae_R-7_group:克里斯滕森菌科R-7群;Turicibacter:苏黎世杆菌属;Norank_f_Eubacterium_coprostanoligenes_group:未排位真杆菌群。 Fig.6 Histogram of relative abundance of rumen microflora at genus level of Tan sheep |
2.4 瘤胃菌群功能预测分析(PICRUSt)
表7 滩羊瘤胃菌群功能丰度KEGG通路分析Table 7 KEGG pathway analysis of functional abundance of rumen microflora of Tan sheep |
| 一级通路 Primary pathway | 二级通路 Secondary pathway | 对照组 Control group | 2%组 2% group | 4%组 4% group | 8%组 8% group | SEM | P值 P-value | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 新陈代谢 Metabolism | 全局地图和概览图 Global and overview maps | 18 943 562.62 ±603 242.94 | 19 142 808.51 ±669 752.36 | 19 958 658.17 ±1 016 196.39 | 19 453 720.93 ±830 684.66 | 185 494.90 | 0.24 | ||||||||||||||
| 氨基酸代谢 Amino acid metabolism | 3 312 795.61 ±98 258.69ab | 3 454 698.48 ±100 018.31a | 3 640 082.66 ±129 715.79c | 3 507 589.93 ±104 245.03bc | 38 835.77 | <0.01 | |||||||||||||||
| 能量代谢 Energy metabolism | 2 023 667.33 ±62 010.51 | 2 030 639.15 ±60 147.22 | 2 120 983.77 ±101 395.52 | 2 045 735.91 ±84 065.77 | 18 447.47 | 0.23 | |||||||||||||||
| 辅因子和维生素 的代谢 Metabolism of cofactors and vitamins | 2 015 715.05 ±75 476.68 | 2 013 919.05 ±62 905.92 | 2 136 851.54 ±184 191.91 | 2 077 727.52 ±115 485.08 | 27 104.69 | 0.34 | |||||||||||||||
| 核苷酸代谢 Nucleotide metabolism | 1 381 460.24 ±61 446.44 | 1 386 087.56 ±40 164.25 | 1 436 413.37 ±79 875.75 | 1 393 148.09 ±78 727.64 | 14 636.69 | 0.56 | |||||||||||||||
| 碳水化合物代谢 Carbohydrate metabolism | 4 464 270.16 ±111 338.25 | 4 484 069.72 ±196 262.15 | 4 749 553.94 ±295 272.81 | 4 605 019.08 ±295 348.62 | 55 270.03 | 0.24 | |||||||||||||||
| 遗传信息处理 Genetic information processing | 翻译 Translation | 1 800 872.89 ±65 323.91 | 1 865 712.81 ±57 574.57 | 1 827 201.77 ±48 060.07 | 1 833 239.44 ±49 112.57 | 12 551.40 | 0.36 | ||||||||||||||
| 复制和修复 Replication and repair | 1 539 606.83 ±58 619.09 | 1 598 152.93 ±47 623.63 | 1 594 288.18 ±55 024.55 | 1 572 278.02 ±53 809.22 | 12 282.51 | 0.33 | |||||||||||||||
| 环境信息处理 Environmental information processing | 信号转导 Signal transduction | 877 103.47 ±57 070.63 | 956 736.81 ±135 198.9 | 879 588.21 ±32 807.76 | 912 818.8 ±48 852.45 | 17 826.29 | 0.38 | ||||||||||||||
| 膜输送 Membrane transport | 1 083 996.65 ±93 951.66 | 1 200 723.77 ±174 567.58 | 1 012 908.27 ±107 309.54 | 1 103 973.93 ±94 382.61 | 29 420.02 | 0.15 | |||||||||||||||
图7 滩羊瘤胃菌群功能丰度KEGG一级通路热图Metabolism:新陈代谢;Genetic information processing:遗传信息处理; Environmental information processing: 环境信息处理; Cellular processes:细胞过程; Human diseases:人类疾病; Organismal systems:生物体系统。 Fig.7 Heat map of KEGG primary pathways of functional abundance of rumen microflora of Tan sheep |
图8 滩羊瘤胃菌群功能丰度KEGG二级通路热图Global and overview maps:全局地图和概览图;Carbohydrate metabolism:碳水化合物代谢;Amino acid metabolism:氨基酸代谢;Energy metabolism:能量代谢;Nucleotide metabolism:核苷酸代谢; Metabolism of cofactors and vitamins:辅助因子和维生素代谢;Translation:翻译;Replication and repair:复制和修复:Signal transduction:信号转导;Membrane transport:膜输送。 Fig.8 Heat map of KEGG secondary pathways of functional abundance of rumen microflora of Tan sheep |

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