1 材料与方法
1.1 伦理声明
1.2 试验设计及样品采集
1.3 蛋品质指标分析
1.4 空肠和盲肠微生物16S rDNA测序
1.4.1 基因组DNA提取及质量检测
1.4.2 PCR扩增
1.4.3 PCR产物纯化及测序
1.5 生物信息学分析
1.6 空肠和盲肠内容物中SCFA含量检测
1.7 统计分析
2 结果与分析
2.1 上笼应激对绍兴鸭产蛋性能和体重的影响
图1 不同上笼时间点绍兴鸭产蛋率(A)、体重(B)、蛋壳强度(C)和哈氏单位(D)的变化D0:第0天(上笼前);D1:第1天;D3:第3天;D7:第7天;D14:第14天。数据柱标注不同小写字母表示差异显著(P<0.05),标注相同小写字母或无字母标注表示差异不显著(P>0.05)。下图同。 Fig.1 Changes of egg production rate (A), body weight (B), eggshell strength (C) and Haugh unit (D) of Shaoxing ducks at different caging time points D0: day 0 (before caging); D1: day 1; D3: day 3; D7: day 7; D14: day 14. Different lowercase letters on the data bars indicate significant difference (P<0.05), while the same lowercase letter or no letter on the data bars indicate no significant difference (P>0.05). The same as below. |
2.2 上笼应激对绍兴鸭肠道菌群Alpha多样性的影响
2.3 上笼应激对绍兴鸭肠道菌群Beta多样性的影响
2.4 上笼应激对绍兴鸭肠道菌群组成的影响
图4 不同上笼时间点绍兴鸭空肠(A、B)和盲肠(C、D)菌群在门和属水平上的组成分析Firmicutes:厚壁菌门;Bacteroidota:拟杆菌门;Proteobacteria:变形菌门;Campylobacterota:弯曲菌门;Actinobacteriota:放线菌门;Desulfobacterota:脱硫杆菌门; Myxococcota:黏液球菌门;Patescibacteria:帕特西菌门;Cyanobacteria:蓝细菌门;Deferribacterota:脱铁杆菌门;Fusobacteriota:梭杆菌门;Spirochaetota:螺旋菌门;Helicobacter:螺杆菌属;Ligilactobacillus:利氏乳杆菌属;Muribaculum:鼠杆菌属;Asinibacterium:异杆菌属;Streptococcus:链球菌属;Curvibacter:弯杆菌属;Alistipes:另枝菌属; Bacteroides:拟杆菌属;Blautia:布劳特氏菌属;Lachnoclostridium:拉克梭菌属;Faecalibacterium:粪杆菌属;Prevotella:普雷沃氏菌属;Subdoligranulum:罕见小球菌属;Paraprevotella:帕拉普雷沃菌属;Parabacteroides:帕拉拟杆菌属;Erysipelatoclostridium:丹毒丝菌属;Fusobacterium:梭杆菌属;Butyricicoccus:丁酸梭菌属;Peptoclostridium:梭状芽孢杆菌属。 Fig.4 Composition analysis of bacterial community at phylum and genus levels in jejunum (A and B) and cecum (C and D) of Shaoxing ducks at different caging time points |
2.5 上笼应激对绍兴鸭肠道差异菌群组成的影响
图5 不同上笼时间点绍兴鸭空肠菌群LEfSe分析(A)及差异菌属分布热图(B)Chitinophagales:鞘氨醇菌属;Thermoanaerobaculum:嗜热厌氧杆菌属;Thermoanaerobaculaceae:嗜热厌氧杆菌科;Thermoanaerobaculales:嗜热厌氧杆菌属;Thermoanaerobaculia:热厌氧杆菌纲;Bifidobacterium:双歧杆菌属;Bifidobacteriaceae:双歧杆菌科;Bifidobacteriales:双歧杆菌目;Dermabacteraceae:皮杆菌属;Intrasporangiaceae:间胞囊菌科;Chitinophagaceae:噬几丁质菌属;Campylobacter:弯曲菌属;Campylobacteraceae:弯曲菌科;Tolypothrix:单歧藻属;Nostocaceae:普通念珠藻科;Turicibacter:苏黎世杆菌属;Aerococcus:气球菌属;Carnobacterium:肉杆菌属;Trichococcus:毛滴虫属;Carnobacteriaceae:肉杆菌科;Latilactobacillus:广布乳杆菌属;Weissella:魏斯氏菌属;Lactococcus:乳球菌属;Salinicoccus:盐球菌属;Staphylococcus:葡萄球菌属;Monoglobus:单球菌属;Monoglobaceae:单球菌科;Monoglobales:单球菌目;Butyricicoccus:丁酸梭菌属;Butyricicoccaceae:丁酸梭菌科;Desulfofarcimen:脱硫肠状菌属;Desulfotomaculales:脱硫肠状菌目;Desulfotomaculia:脱硫肠状菌纲。 Fig.5 LEfSe analysis of bacterial community (A) and heat map of differential bacterial genera distribution (B) in jejunum of Shaoxing ducks at different caging time points |
图6 不同上笼时间点绍兴鸭盲肠菌群LEfSe分析(A)及差异菌属分布热图(B)Actinomadura:马杜拉放线菌属;Thermomonosporaceae:高温单孢菌科;Streptosporangiales:链孢子囊目;Olsenella:欧陆森氏菌属;Atopobiaceae:奇异菌科;Slackia:沙雷氏菌属;Coriobacteriales:红蝽菌目;Coriobacteriia:红蝽菌纲;Barnesiella:巴氏杆菌属;Alloprevotella:拟普雷沃氏菌属;Prevotella:普雷沃氏菌属;Tannerellaceae:坦纳菌科;Mucispirillum:黏螺菌属;Deferribacteraceae:脱铁杆菌科;Deferribacterales:脱铁杆菌目;Deferribacteres:脱铁杆菌纲;Deferribacterota:脱铁杆菌门;Anaeroplasma:厌氧支原体属;Acholeplasmataceae:无胆甾支原体科;Acholeplasmatales:无胆甾支原体目;Solobacterium:莫雷梭菌属;Enterococcus:肠球菌属;Enterococcaceae:肠球菌科;Latilactobacillus:广布乳杆菌属;Limosilactobacillus:黏液乳杆菌属;Lactobacillaceae:乳杆菌科;Lactococcus:乳球菌属;Streptococcus:链球菌属;Streptococcaceae:链球菌科;Roseburia:罗氏菌属;Syntrophococcus:互营球菌属;Sporobacter:孢杆菌属;Oscillospirales:颤螺菌目;Mogibacterium:莫吉杆菌属;Rhizobiales:根瘤菌目;Dialister:戴阿利斯特菌属;Veillonellaceae:韦荣球菌科;Fusobacterium:梭杆菌属;Fusobacteriaceae:梭杆菌科;Fusobacteriales:梭杆菌目;Fusobacteriia:梭杆菌纲;Fusobacteriota:梭杆菌门。 Fig.6 LEfSe analysis of bacterial community (A) and heat map of differential bacterial genera distribution (B) in cecum of Shaoxing ducks at different caging time points |

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