[1] STRANDWITZ P.Neurotransmitter modulation by the gut microbiota[J].Brain Research,2018,1693(Pt B):128-133.
[2] LANGE K,BUERGER M,STALLMACH A,et al.Effects of antibiotics on gut microbiota[J].Digestive Diseases,2016,34(3):260-268.
[3] WALTER J,LEY R.The human gut microbiome:ecology and recent evolutionary changes[J].Annual Review of Microbiology,2011,65:411-429.
[4] CAREY H V,ANDREWS M T,MARTIN S L.Mammalian hibernation:cellular and molecular responses to depressed metabolism and low temperature[J].Physiological Reviews,2003,83(4):1153-1181.
[5] GIROUD S,HABOLD C,NESPOLO R F,et al.The torpid state:recent advances in metabolic adaptations and protective mechanisms[J].Frontiers in Physiology,2021,11:623665.
[6] SONOYAMA K,FUJIWARA R,TAKEMURA N,et al.Response of gut microbiota to fasting and hibernation in Syrian hamsters[J].Applied and Environmental Microbiology,2009,75(20):6451-6456.
[7] CRAMP R L,FRANKLIN C E.Arousal and re-feeding rapidly restores digestive tract morphology following aestivation in green-striped burrowing frogs[J].Comparative Biochemistry and Physiology-Part A:Molecular & Integrative Physiology,2005,142(4):451-460.
[8] DILL-MCFARLAND K A,NEIL K L,ZENG A,et al.Hibernation alters the diversity and composition of mucosa-associated bacteria while enhancing antimicrobial defence in the gut of 13-lined ground squirrels[J].Molecular Ecology,2014,23(18):4658-4669.
[9] STEVENSON T J,DUDDLESTON K N,BUCK C L.Effects of season and host physiological state on the diversity,density,and activity of the arctic ground squirrel cecal microbiota[J].Applied and Environmental Microbiology,2014,80(18):5611-5622.
[10] SOMMER F,STÅHLMAN M,ILKAYEVA O,et al.The gut microbiota modulates energy metabolism in the hibernating brown bear
Ursus arctos[J].Cell Reports,2016,14(7):1655-1661.
[11] 王有,袁丽丽,彭霞,等.达乌尔黄鼠冬眠模式年龄性别差异的实验研究[J].沈阳师范大学学报(自然科学版),2009,27(3):351-355. WANG Y,YUAN L L,PENG X,et al.Experimental study on hibernation patterns in different ages and sexes of Daurian ground squirrel (
Spermophilus dauricus)[J].Journal of Shenyang Normal University (Natural Science Edition),2009,27(3):351-355.(in Chinese)
[12] 杨明,邢昕,管淑君,等.达乌尔黄鼠冬眠期间体温的变化和冬眠模式[J].兽类学报,2011,31(4):387-395. YANG M,XING X,GUAN S J,et al.Hibernation patterns and changes of body temperature in Daurian ground squirrels (
Spermophilus dauricus) during hibernation[J].Acta Theriologica Sinica,2011,31(4):387-395.(in Chinese)
[13] ROGNES T,FLOURI T,NICHOLS B,et al.VSEARCH:a versatile open source tool for metagenomics[J].PeerJ,2016,4:e2584.
[14] EDGAR R C,FLYVBJERG H.Error filtering,pair assembly and error correction for next-generation sequencing reads[J].Bioinformatics,2015,31(21):3476-3482.
[15] EDGAR R C.Search and clustering orders of magnitude faster than BLAST[J].Bioinformatics,2010,26(19):2460-2461.
[16] ZHANG J Y,LIU Y X,ZHANG N,et al.NRT1.1B is associated with root microbiota composition and nitrogen use in field-grown rice[J].Nature Biotechnology,2019,37(6):676-684.
[17] SEGATA N,IZARD J,WALDRON L,et al.Metagenomic biomarker discovery and explanation[J].Genome Biology,2011,12(6):R60.
[18] LANGILLE M G I,ZANEVELD J,CAPORASO J G,et al.Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences[J].Nature Biotechnology,2013,31(9):814-821.
[19] PARKS D H,TYSON G W,HUGENHOLTZ P,et al.STAMP:statistical analysis of taxonomic and functional profiles[J].Bioinformatics,2014,30(21):3123-3124.
[20] ZMORA N,SUEZ J,ELINAV E.You are what you eat:diet,health and the gut microbiota[J].Nature Reviews:Gastroenterology & Hepatology,2019,16(1):35-56.
[21] XIAO G H,LIU S,XIAO Y H,et al.Seasonal changes in gut microbiota diversity and composition in the greater horseshoe bat[J].Frontiers in Microbiology,2019,10:2247.
[22] CAREY H V,WALTERS W A,KNIGHT R.Seasonal restructuring of the ground squirrel gut microbiota over the annual hibernation cycle[J].American Journal of Physiology.Regulatory,Integrative and Comparative Physiology,2013,304(1):R33-R42.
[23] TONG Q,DU X P,HU Z F,et al.Comparison of the gut microbiota of
Rana amurensis and
Rana dybowskii under natural winter fasting conditions[J].FEMS Microbiology Letters,2019,366(21):fnz241.
[24] TONG Q,HU Z F,DU X P,et al.Effects of seasonal hibernation on the similarities between the skin microbiota and gut microbiota of an amphibian (
Rana dybowskii)[J].Microbial Ecology,2020,79(4):898-909.
[25] HUBER N,VETTER S,STALDER G,et al.Dynamic function and composition shift in circulating innate immune cells in hibernating garden dormice[J].Frontiers in Physiology,2021,12:620614.
[26] 朱宇航,司华哲,张玉,等.冬眠行为与动物肠道微生物相互作用机制的研究进展[J].动物营养学报,2021,33(7):3719-3725. ZHU Y H,SI H Z,ZHANG Y,et al.Research progress on interaction mechanism between animal hibernation behavior and gut microbiota[J].Chinese Journal of Animal Nutrition,2021,33(7):3719-3725.(in Chinese)
[27] CHEVALIER C,STOJANOVIĆ O,COLIN D J,et al.Gut microbiota orchestrates energy homeostasis during cold[J].Cell,2015,163(6):1360-1374.
[28] BUCK C L,BARNES B M.Annual cycle of body composition and hibernation in free-living arctic ground squirrels[J].Journal of Mammalogy,1999,80(2):430-442.
[29] FLORANT G L,PORST H,PEIFFER A,et al.Fat-cell mass,serum leptin and adiponectin changes during weight gain and loss in yellow-bellied marmots (
Marmota flaviventris)[J].Journal of Comparative Physiology:Biochemical,Systemic,and Environmental,2004,174(8):633-639.
[30] WILLIAMS C T,BARNES B M,RICHTER M,et al.Hibernation and circadian rhythms of body temperature in free-living arctic ground squirrels[J].Physiological and Biochemical Zoology,2012,85(4):397-404.
[31] BOSMANS L,POZO M I,VERRETH C,et al.Hibernation leads to altered gut communities in bumblebee queens (
Bombus terrestris)[J].Insects,2018,9(4):188.
[32] WENG F C H,YANG Y J,WANG D.Functional analysis for gut microbes of the brown tree frog (
Polypedates megacephalus) in artificial hibernation[J].BMC Genomics,2016,17(Suppl.13):1024.
[33] MAURICE C F,KNOWLES S C L,LADAU J,et al.Marked seasonal variation in the wild mouse gut microbiota[J].The ISME Journal,2015,9(11):2423-2434.
[34] REN T T,BOUTIN S,HUMPHRIES M M,et al.Seasonal,spatial,and maternal effects on gut microbiome in wild red squirrels[J].Microbiome,2017,5(1):163.
[35] WEXLER A G,GOODMAN A L.An insider's perspective:
Bacteroides as a window into the microbiome[J].Nature Microbiology,2017,2:17026.
[36] LAPÉBIE P,LOMBARD V,DRULA E,et al.Bacteroidetes use thousands of enzyme combinations to break down glycans[J].Nature Communications,2019,10(1):2043.
[37] LEY R E,TURNBAUGH P J,KLEIN S,et al.Microbial ecology:human gut microbes associated with obesity[J].Nature,2006,444(7122):1022-1023.
[38] IKEYAMA N,MURAKAMI T,TOYODA A,et al.Microbial interaction between the succinate-utilizing bacterium
Phascolarctobacterium faecium and the gut commensal
Bacteroides thetaiotaomicron[J].MicrobiologyOpen,2020,9(10):e1111.
[39] KRAUTKRAMER K A,FAN J,BÄCKHED F.Gut microbial metabolites as multi-kingdom intermediates[J].Nature Reviews Microbiology,2021,19(2):77-94.
