1 材料与方法
1.1 试验菌株
1.2 试验设计及饲养管理
表1 基础饲粮组成及营养水平(风干基础)Table 1 Composition and nutrient levels of the basal diet (air-dry basis) % |
| 原料Ingredients | 含量Content | 营养水平Nutrient levels2) | 含量Content | |
|---|---|---|---|---|
| 膨化玉米Extrusion corn | 40.0 | 粗蛋白质CP | 22.38 | |
| 膨化豆粕Puffed soybean meal | 13.0 | 粗脂肪EE | 5.29 | |
| 膨化小麦粉Puffed wheat flour | 12.7 | 粗灰分Ash | 5.77 | |
| 麦麸Wheat bran | 10.0 | 粗纤维CF | 3.91 | |
| 鸡肉粉Chicken meal | 10.0 | 钙Ca | 0.81 | |
| 肉骨粉Meat and bone meal | 9.0 | 总磷TP | 0.76 | |
| 豆油Soybean oil | 2.0 | 赖氨酸Lys | 1.34 | |
| 磷酸氢钙CaHPO4 | 0.8 | 蛋氨酸+胱氨酸Met+Cys | 0.98 | |
| 石粉Limestone | 0.1 | 代谢能ME/(MJ/kg) | 14.69 | |
| 赖氨酸Lys | 0.9 | |||
| 蛋氨酸Met | 0.5 | |||
| 预混料Premix1) | 1.0 | |||
| 合计Total | 100.0 |
1)每千克预混料含有One kilogram of premix contained the following:VA 625 000 IU,VD3 100 000 IU,VE 6 000 IU,VK3 200 mg,VB1 1 250 mg,VB2 900 mg,VB6 750 mg,VB12 2.25 mg,生物素 biotin 10 mg,叶酸 folic acid 150 mg,烟酸 nicotinic acid 2 500 mg,泛酸钙 calcium pantothenate 1 750 mg,VC 10 050 mg,胆碱 choline 240 000 mg,Fe 9 600 mg,Cu 1 800 mg,Zn 7 800 mg,Mn 4 800 mg,I 144 mg,Co 24 mg,Se 30 mg。 2)代谢能为计算值,其余为实测值。ME was a calculated value, while the others were measured values. |
1.3 样品采集
1.4 检测指标及方法
1.4.1 饲粮营养成分测定
1.4.2 短链脂肪酸含量检测
1.4.3 16S rRNA粪便微生物群检测
1.4.4 非靶向代谢组检测
1.5 统计分析
2 结果
2.1 犬源罗伊氏乳杆菌LRA7对犬粪便短链脂肪酸含量的影响
表2 犬源罗伊氏乳杆菌LRA7对犬粪便短链脂肪酸含量的影响Table 2 Effects of canine-derived Lactobacillus reuteri LRA7 on fecal short-chain fatty acid contents in dogs mg/g |
| 项目 Items | 组别Groups | P值 P-value | ||
|---|---|---|---|---|
| CK | LR | HR | ||
| 乙酸Acetic acid | 4.70±0.48b | 5.56±0.58a | 5.81±0.66a | 0.012 |
| 丙酸Propionic acid | 3.22±0.62b | 4.01±0.58a | 4.30±0.63a | 0.020 |
| 丁酸Butyric acid | 1.90±0.60 | 1.93±0.73 | 1.77±0.28 | 0.885 |
| 异丁酸Isobutyric acid | 0.05±0.02 | 0.09±0.04 | 0.08±0.05 | 0.172 |
| 异戊酸Isovaleric acid | 0.09±0.03 | 0.15±0.06 | 0.15±0.12 | 0.369 |
同行数据肩标无字母或相同字母表示差异不显著(P>0.05),不同小写字母表示差异显著(P<0.05)。下表同。 | |
In the same row, values with no letter or the same letter superscripts mean no significant difference (P>0.05), while with different small letter superscripts mean significant difference (P<0.05). The same as below. |
2.2 犬源罗伊氏乳杆菌LRA7对犬肠道菌群的影响
2.2.1 物种组成分析
图1 犬肠道菌群韦恩图和物种相对丰度图A:韦恩图 Venn diagram;B:门水平物种相对丰度 relative abundance of species at phylum level;C:属水平物种相对丰度 relative abundance of species at genus level。 Campylobacterota:弯曲菌门;Proteobacteria:变形菌门;Bacteroidota:拟杆菌门;Fusobacteriota:梭杆菌门;Actinobacteriota:放线菌门;Firmicutes:厚壁菌门;Muribaculaceae:穆里巴库鲁姆菌属;Romboutsia:罗氏菌属;Blautia:经黏液真杆菌属;Sarcina:八叠球菌属;Streptococcus:链球菌属;Peptoclostridium:消化梭菌属;Fusobacterium:梭杆菌属;Turicibacter:苏黎世杆菌属;Bifidobacterium:双歧杆菌属;Lactobacillus:乳杆菌属;Others:其他。 Fig.1 Venn diagram and species relative abundance diagrams of intestinal flora in dogs |
2.2.2 α多样性分析
表3 犬源罗伊氏乳杆菌LRA7对犬肠道菌群α多样性的影响Table 3 Effects of canine-derived Lactobacillus reuteri LRA7 on intestinal flora alpha diversity in dogs |
| 项目 Items | 组别Groups | P值 P-value | ||
|---|---|---|---|---|
| CK | LR | HR | ||
| Chao1指数Chao1 index | 144.78±32.55 | 169.55±34.82 | 133.83±31.54 | 0.192 |
| 可观测物种数Number of observable species | 144.17±32.15 | 169.17±34.85 | 133.83±31.54 | 0.194 |
| 优势度指数Dominance index | 0.09±0.03 | 0.09±0.05 | 0.19±0.16 | 0.149 |
| Pieloue指数Pieloue index | 0.65±0.05 | 0.64±0.07 | 0.55±0.12 | 0.110 |
| Shannon指数Shannon index | 4.64±0.53 | 4.77±0.66 | 3.90±0.97 | 0.124 |
| Simpson指数Simpson index | 0.91±0.03 | 0.91±0.05 | 0.81±0.16 | 0.149 |
2.2.3 β多样性分析
2.2.4 肠道菌群差异分析
图3 罗伊氏乳杆菌LRA7对犬肠道菌群差异的影响A: CK组与LR组t-检验分析 t-test analysis of CK and LR groups;B:CK组与HR组t-检验分析 t-test analysis of CK and HR groups;C:LDA值分布柱状图 histogram of LDA value distribution;D:进化分支图 evolutionary branching plot。 Bacteroidales:拟杆菌目;Bacteroidia:拟杆菌纲;Bacteroidota:拟杆菌门;Veillonellaceae:韦荣氏球菌科;Prevotella:普雷沃氏菌属;Clostridium_sensu_stricto_1:梭状芽孢杆菌属; Clostridiaceae:梭菌科;Clostridiales:梭菌目。 Fig.3 Effects of Lactobacillus reuteri LRA7 on intestinal flora differences in dogs |
2.3 犬源罗伊氏乳杆菌LRA7对犬粪便代谢组的影响
2.3.1 代谢产物主成分分析
2.3.2 基于正交偏最小二乘法判别分析(OPLS-DA)模型的差异代谢物分析
图5 代谢物OPLS-DA得分图和置换检验分析A:LR组与CK组正交偏最小二乘法判别分析OPLS-DA of LR and CK groups;B:LR组与CK组置换检验 permutation test of LR and CK groups;C:HR组与CK组正交偏最小二乘法判别分析OPLS-DA of HR and CK groups;D:HR组与CK组置换检验 permutation test of HR and CK groups。 Fig.5 Analysis of metabolite OPLS-DA score plots and permutation tests |
2.3.3 差异代谢物及分类统计分析
图6 差异代谢物火山图及差异代谢物分类统计A:LR组与CK组差异代谢物火山图 differential metabolite volcano plot of LR and CK groups;B:LR组与CK组差异代谢物分类图 differential metabolite categorization plot of LR and CK groups;C:HR组与CK组差异代谢物火山图 differential metabolite volcano plot of HR and CK groups;D:HR组与CK组差异代谢物分类图 differential metabolite categorization plot of HR and CK groups。 Down:显著下调 significant down-regulation;Up:显著上调 significant up-regulation;NoSig:不显著 non-significant;Alkaloids and derivatives:生物碱及其衍生物;Benzenoids:苯环类化合物;Isoflavonoids:异黄酮类化合物;Lignans, neolignans and related compounds:木脂素、类木脂素及其化合物;Lipids and lipid-like molecules:脂质和类脂分子;Macrolides and analogues:大环内酯及其类似物;Naphthalenes:萘类化合物;Nucleosides, nucleotides, and analogues:核苷、核苷酸及其类似物;Organic acids and derivatives:有机酸及其衍生物;Organic nitrogen compounds:有机氮化合物;Organic oxygen compounds:有机氧化合物;Organoheterocyclic compounds:有机杂环化合物;Organometallic compounds:金属有机化合物;Phenylpropanoids and polyketides:苯丙素类和聚酮类化合物;Others:其他。 Fig.6 Differential metabolite volcano map and differential metabolite classification statistics |
2.3.4 差异代谢物KEGG代谢通路分析
图7 差异代谢物KEGG富集通路图A:LR组与CK组KEGG通路图 KEGG pathway map of LR and CK groups;B:HR与CK组KEGG通路图 KEGG pathway map of LR and CK groups。 Secondary classification:二级分类;Amino acid metabolism:氨基酸代谢;Cancer: overview 癌症概述;Digestive system:消化系统;Environmental adaptation:环境适应;Global and overview maps:全球概览图;Membrane transport:膜运输通路;Nervous system:神经系统通路;Sensory system:感觉系统;Cell growth and death:细胞生长与死亡通路;Endocrine system:内分泌系统;Lipid metabolism:脂类代谢;Signal transduction:讯息传递;ABC transporters:ABC转运蛋白;Choline metabolism in cancer:癌症中的碱基代谢;Tyrosine metabolism:酪氨酸代谢;Tryptophan metabolism:色氨酸代谢;Phenylalanine metabolism:苯丙氨酸代谢;Metabolic pathways:代谢途径;Glycine, serine and threonine metabolism:甘氨酸、丝氨酸和苏氨酸代谢;Alanine, aspartate and glutamate metabolism:丙氨酸、天冬氨酸和谷氨酸代谢:Vitamin digestion and absorption:维生素的消化和吸收;Thermogenesis:生热作用:Taste transduction:味觉通路;Retrograde endocannabinoid signaling:内源性大麻素系统;GABAergic synapse:GABA能突触;Necroptosis:坏死性凋亡;Sphingolipid signaling pathway:鞘脂信号通路;Sphingolipid metabolism:鞘脂类代谢;Glycerophospholipid metabolism:甘油磷脂代谢;Ether lipid metabolism:醚脂质代谢;Regulation of lipolysis in adipocytes:脂肪细胞中脂肪分解的调节;Fat digestion and absorption:脂肪消化吸收。 Fig.7 Differential metabolite KEGG enrichment pathway map |
2.4 肠道菌群与代谢组相关性分析
图8 犬肠道菌群与差异代谢物相关性分析A:LR组与CK组肠道菌群与代谢组相关性分析 correlation analysis of intestinal flora and metabolome in LR and CK groups;B:HR组与CK组肠道菌群与代谢组相关性分析 correlation analysis of intestinal flora and metabolome in HR and CK groups。*表示显著相关(P<0.05) * indicates a significant correlation (P<0.05)。 GABA:γ-氨基丁酸γ-aminobutyric acid;2-ethylsuberic acid:2-乙基己酸;Guanine:鸟嘌呤;Atropaldehyde:阿托醛;PC:磷脂酰胆碱 phosphatidylcholine;Gitogenin:姜黄素;Riboflavin:核黄素;Equol:雌马酚;Diethylpropion:乙二胺苯酮;PC(18∶0/20∶4):1-十八烷酰基-2-花生四烯-sn-甘油-3-磷酸胆碱 1-octadecanoacyl-2-arachidene-Sn-glycerol-3-phosphate choline;Phosphocholine:磷酸胆碱;Bindarit:宾达利特;8-hydroxy-9,10-epoxystearic acid:8-羟基-9,10-环氧硬脂酸;Cholic acid 7-sulfate:7-硫酸盐胆酸;13(S)-HODE methyl ester:13-甲基十四烷酸甲酯;SM(d18∶2/16∶0):N-棕榈酰-D赤型-鞘氨醇磷酰胆碱 N-palmitoyl-D rythrosphingosine phosphoylcholine; Lactobacillus:乳酸菌属;Bifidobacterium:双歧杆菌属;Turicibacter:苏黎氏杆菌属;Fusobacterium:梭杆菌属;Peptoclostridium:消化梭菌属;Streptococcus:链球菌属;Sarcina:八叠球菌属;Blautia:经黏液真杆菌属;Romboutsia:罗氏菌属;Muribaculaceae:穆里巴库鲁姆菌属。 Fig.8 Correlation analysis of intestinal flora with differential metabolites in dogs |
