1 材料与方法
1.1 试验材料
1.2 细胞培养、冻存和复苏
1.3 培养基的制备
1.4 CAG半数效应浓度(median effect concentration,EC50)计算
1.5 氧化应激水平分析
1.5.1 ROS测定
1.5.2 线粒体超氧化物水平的评估
1.5.3 线粒体膜电位评估
1.6 免疫荧光染色
1.7 透射电镜扫描
1.8 蛋白质免疫印迹
1.9 转录组测序
1.9.1 RNA提取和逆转录
表1 去除基因组DNA反应体系Table 1 Reaction system for removing genomic DNA |
| 试剂Reagents | 10 μL反应体系10 μL reaction system |
|---|---|
| 10×gDNA去污剂混合物10×gDNA remover mix | 1 μL |
| RNA模板RNA template | 1 μg |
| 无RNA酶水RNase-free water | 加至10 μL |
1.9.2 转录组测序分析
1.9.3 实时荧光定量PCR(RT-qPCR)
表3 RT-qPCR反应体系Table 3 RT-qPCR reaction system |
| 试剂 Reagents | 20 μL反应体系 20 μL reaction system | 终浓度 Final concentration |
|---|---|---|
| 2×快速通用SYBR主混合液2×SuperFast Universal SYBR master mix | 10 μL | 1× |
| 正向引物Forward primer (10 μmol/L) | 0.4 μL | 0.2 μmol/L |
| 反向引物Reverse primer (10 μmol/L) | 0.5 μL | 0.2 μmol/L |
| 模板DNA Template DNA | 100 ng | |
| 超纯水ddH2O | 加至20 μL |
表4 RT-qPCR反应程序Table 4 RT-qPCR reaction procedure |
| 步骤Steps | 温度Temperature/℃ | 时间Time/s | 循环Cycle |
|---|---|---|---|
| 预变性Premutability | 95 | 30 | 1 |
| 变性Mutability | 95 | 10 | 45 |
| 退火/延伸Annealing/extension | 60 | 30 | |
| 95 | 15 | 1 |
表5 本研究所用引物序列Table 5 Primer sequences used in this study |
| 引物 Primers | 引物序列 Primer sequences (5'—3') | 退火温度 Annealing temperature/℃ | 产物大小 Product size/bp |
|---|---|---|---|
| C-X-C基序趋化因子配体2 CXCL2 | F:CATGGTGAAGAAAATCATCGAGAA | 57.57 | 68 |
| R:CACACACGGCTAACTTTTTCTTTG | 59.50 | ||
| 白细胞介素-11 IL-11 | F:CAAATTCCCAGCTGACGGAGA | 60.34 | 127 |
| R:GTAGGAAAACAGGTCTGCTCG | 58.66 | ||
| 基质金属蛋白酶3 MMP3 | F:GGCCTGCCCAAGTGGAGAAA | 62.70 | 127 |
| R:GCGGAGTCACTTCCTCCCAG | 62.20 | ||
| 基质金属蛋白酶1 MMP1 | F:TGTTCTCACTCCAGGGAACC | 58.94 | 239 |
| R:TTCCTCCAGGTCCATCAAAG | 56.82 | ||
| 趋化因子配体2 CCL2 | F:CCTCATCCTCCAGCATGAAGGTCTCTGC | 68.21 | 76 |
| R:CCTCATCCTCCAGCATGAAGGTCTCTGC | 68.21 | ||
| 趋化因子配体20 CCL20 | F:GGTGCTGCTGCTCTACCTCT | 61.61 | 113 |
| R:GCTGTGTGAAGCCCATGATA | 57.96 | ||
| 血小板反应蛋白1 THBS1 | F:CAAAGAGTTGGCCAGTGAGC | 59.40 | 153 |
| R:ATGATGGGGCAGGACACTTT | 59.29 | ||
| 胰岛素样生长因子结合蛋白4 IGFBP4 | F:ACCGCAACGGCAACTTCCA | 63.06 | 89 |
| R:TCCCGTCTTCCGGTCCACA | 62.81 | ||
| 胰岛素样生长因子结合蛋白2 IGFBP2 | F:TCGTCTGGGCAGGGGTGCTACTG | 68.13 | 63 |
| R:GCTGTGGTTTACTGCATCCG | 59.55 | ||
| 胰岛素样生长因子结合蛋白5 IGFBP5 | F:GCAAGCCAAGATCGAGAGAG | 58.43 | 102 |
| R:GTGTGCTTGGGTCGGAAGAT | 60.32 | ||
| 核因子E2相关因子2 Nrf2 | F:GGAGCTGTTGATCTGTTGCG | 59.55 | 132 |
| R:TCCATGTCCCTTGACAGCAA | 59.23 | ||
| p62 | F:TGTGTCCCCTTTCCTGTCTC | 58.94 | 150 |
| R:ACCCTCGTGTCACTTGCTCT | 61.12 | ||
| β-肌动蛋白 β-actin | F:TCCCTGGAGAAGAGCTACGA | 59.38 | 187 |
| R:TGTTGGCGTAGAGGTCCTTC | 59.39 |
1.10 数据统计分析
2 结果与分析
2.1 CAG效应分析
图1 CAG剂量-效应曲线(12 h,A)与细胞形态(B)P3、P6和P9分别表示第3代、第6代和第9代细胞。PEMFs:猪耳缘成纤维细胞;CAG:环黄芪醇;EC50:半数效应浓度;NC:对照。下图同。 Fig.1 CAG dose-response curves (12 h, A) and cell morphology (B) P3, P6 and P9 represented the 3rd, 6th and 9th generation cells, respectively. PEMFs: porcine ear margin fibroblasts; CAG: cycloastragenol; EC50: median effect concentration; NC: control. The same as below. |
2.2 CAG降低PEMFs氧化应激水平
图2 CAG降低PEMFs氧化应激水平FITC-A:异硫氰酸荧光素标记蛋白A;PE-A:藻红蛋白标记蛋白A;fluorescence intensity:荧光强度;subset:子集;Counts:计数;DCFH-DA:2',7'-二氯二氢荧光素二乙酸酯 2',7'-dichlorodihydrofluorescein diacetate;PerCP-Cy5.5-A:多甲藻黄素-叶绿素-蛋白复合物-Cy5.5标记蛋白A。图6同 The same as Fig.6。 *表示P<0.05,**表示P<0.01。* indicates P<0.05, and ** indicates P<0.01. Fig.2 CAG reduces oxidative stress levels in PEMFs |
2.3 CAG修复DNA损伤
图3 CAG减轻PEMFs DNA损伤DAPI:4',6-二脒基-2-苯基吲哚 4',6-diamidino-2-phenylindole;γ-H2A.X:磷酸化组蛋白H2A.X phospho-histone H2A.X;Merge:合并;Zoom:放大。 **表示P<0.01,****表示P<0.000 1,ns表示无显著差异(P>0.05)。数据柱标记不同字母表示差异显著(P<0.05),图6同。 Fig.3 CAG alleviates DNA damage in PEMFs ** indicates P<0.01, **** indicates P<0.000 1, and ns indicates no significant difference (P>0.05). The data column marked with different letters indicates significant differences (P<0.05), the same as Fig.6. |
2.4 CAG抑制线粒体自噬
图4 CAG抑制PINK1-Parkin通路介导的线粒体自噬DAPI:4',6-二脒基-2-苯基吲哚 4',6-diamidino-2-phenylindole;LC3B:轻链3B light chain 3B;Merge:合并;PINK1:磷酸酶和张力蛋白同源物诱导激酶1 phosphatase and tensin homolog-induced putative kinase 1;β-actin:β-肌动蛋白;Relative protein levels:相对蛋白水平。 #1、#2和#3代表3个重复,图6同。#1, #2 and #3 indicate three repetitions, the same as Fig.6. Fig.4 CAG inhibits PINK1-Parkin pathway mediated mitophagy |
图6 CAG激活Keap1-Nrf2-NQO1抗氧化通路Keap1:Kelch样ECH相关蛋白1 Kelch-like ECH-associated protein 1;Nrf2:核因子E2相关因子2 Nuclear factor E2-related factor 2;NQO1:还原型烟酰胺腺嘌呤二核苷酸(磷酸)醌氧化还原酶1 NAD(P)H quinone dehydrogenase 1;β-actin:β-肌动蛋白;Histone H3:组氨酸H3;Relative protein levels:相对蛋白水平;Sample Name:样本名称;Mean:平均。 Fig.6 CAG activates Keap1-Nrf2-NQO1 antioxidant pathway |
2.5 差异表达基因与qPCR验证
2.6 差异表达基因富集分析
图8 差异表达基因GO分子功能富集分析Telomeric D-loop binding:端粒D环结合;Glutathione hydrolase activity:谷胱甘肽水解酶活性;Epidermal growth factor receptor binding:表皮生长因子受体结合;Heat shock protein binding:热休克蛋白结合;Oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor:氧化还原酶活性,作用于供体CH-NH2基团,氧为受体;NADP binding:烟酰胺腺嘌呤二核苷酸磷酸结合;Chondroitin sulfate binding:硫酸软骨素结合;Calcium-dependent protein binding:钙依赖性蛋白结合;Antioxidant activity:抗氧化活性;Oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor:氧化还原酶活性,作用于供体醛或氧化基团,烟酰胺腺嘌呤二核苷酸或烟酰胺腺嘌呤二核苷酸磷酸为受体;Oxidoreductase activity:氧化还原酶活;GTP binding:三磷酸鸟苷结合;RNA binding:RNA结合;ATP binding:ATP结合;Nucleotide binding:核苷酸结合。 Fig.8 GO molecular function enrichment analysis of differentially expressed genes |
图9 差异表达基因GO生物过程富集分析Respiratory electron transport chain:呼吸电子传递链;Autophagy:自噬;Cellular response to oxidative stress:细胞对氧化应激的反应;Glutathione metabolic process:谷胱甘肽代谢过程;Cellular oxidant detoxification:细胞氧化解毒;Reactive oxygen species metabolic process:活性氧代谢过程;Regulation of mitochondrion organization:线粒体组织调节;Regulation of autophagy:自噬调节;DNA damage response, signal transduction by p53 class mediator:DNA损伤反应,p53类介质的信号转导;Mitochondrion organization:线粒体组织;Cellular response to epidermal growth factor stimulus:细胞对表皮生长因子刺激的反应;Lysosome localization:溶酶体定位;Mitochondrial fission:线粒体分裂;Cellular response to hypoxia:细胞对缺氧的反应;Cellular response to DNA damage stimulus:细胞对DNA损伤刺激的反应。 Fig.9 GO biological process enrichment analysis of differentially expressed genes |
图10 差异表达基因GO细胞组分富集分析Mitochondrial membrane:线粒体膜;Telomerase holoenzyme complex:端粒酶全酶复合体;Integral component of mitochondrial inner membrane:线粒体内膜不可或缺的组成成分;Autophagosome:自噬体;Melanosome:黑素体;Mitochondrial outer membrane:线粒体外膜;Heterochromatin:异染色质;Chromosome:染色体;Lysosome:溶酶体;Lysosomal membrane:溶酶体膜;Mitochondrion:线粒体;Endoplasmic reticulum:内质网;Cytosol:胞质溶胶;Cytoplasm:细胞质;Nucleus:细胞核。 Fig.10 GO cellular component enrichment analysis of differentially expressed genes |
图12 抗氧化酶基因表达热图SOD:超氧化物歧化酶 superoxide dismutase;HSP:热休克蛋白 heat shock protein;PRDX:过氧化物酶 peroxiredoxin;TXNRD1:硫氧还蛋白还原酶1 thioredoxin reductase 1;NQO1:还原型烟酰胺腺嘌呤二核苷酸(磷酸)醌氧化还原酶1 NAD(P)H quinone dehydrogenase 1;GLRX:谷氧还蛋白 glutaredoxin;ABCC1:ATP结合盒亚家族C成员1 ATP binding cassette subfamily c member 1;GCLC:谷氨酰-半胱氨酸连接酶催化亚基 glutamate-cysteine ligase catalytic subunit;GCLM:谷氨酰-半胱氨酸连接酶调节亚基 glutamate-cysteine ligase modifier subunit;GSR:谷胱甘肽还原酶 glutathione reductase。 Fig.12 Heatmap of antioxidant enzyme gene expression |
