1 材料与方法
1.1 鱼腥草活性成分和靶点的筛选
1.2 肠炎靶点和交集靶点的获取
1.3 蛋白质-蛋白质相互作用(protein-protein interaction,PPI)网络的构建及核心靶点的筛选
1.4 富集分析
1.5 药物活性成分-作用靶点-信号通路网络图的构建
1.6 活性成分和关键靶点的分子对接
2 结果
2.1 鱼腥草活性成分和靶点
表1 鱼腥草的活性成分Table 1 Active components of Houttuynia cordata |
| TCMSP编号 TCMSP No. | 化合物英文名称 English name of compound | 化合物中文名称 Chinese name of compound | 口服生物利用度 OB/% | 类药性 DL |
|---|---|---|---|---|
| MOL003851 | Isoramanone | 异热马酮 | 39.97 | 0.51 |
| MOL000422 | Kaempferol | 山奈酚 | 41.88 | 0.24 |
| MOL004345 | 1-methyl-2-nonacosyl-4-quinolone | 1-甲基-2-九壬基-4-喹诺酮 | 31.54 | 0.50 |
| MOL004350 | Ruvoside_qt | 黄夹次苷丙 | 36.12 | 0.76 |
| MOL004355 | Spinasterol | 波菜甾醇 | 42.98 | 0.76 |
| MOL000098 | Quercetin | 槲皮素 | 46.43 | 0.28 |
| MOL000415 | Rutin | 芦丁 | 3.20 | 0.68 |
| MOL001955 | Chlorogenic acid | 绿原酸 | 11.93 | 0.33 |
| MOL004359 | Houttuynin | 鱼腥草素 | 36.04 | 0.04 |
2.2 肠炎靶点和交集靶点
2.3 鱼腥草防治肠炎的靶点PPI网络及核心靶点
图2 鱼腥草活性成分防治肠炎潜在靶点的PPI网络图仅列出度值排名前5的靶点名称 list only the top 5 target names in degree values ranking。IL6:白细胞介素6 interleukin 6;AKT1:丝氨酸/苏氨酸蛋白激酶1 serine/threonine-protein kinase 1;TNF:肿瘤坏死因子tumor necrosis factor;EGFR:表皮生长因子受体 epidermal growth factor receptor;STAT3:信号转导和转录激活因子3 signal transducer and activator of transcription 3。图3同 the same as Fig.3。 Fig.2 PPI network diagram of potential targets of active component of Houttuynia cordata for preventing and treating enteritis |
图3 鱼腥草活性成分-肠炎交集靶点的同心圆PPI网络图Fig.3 Concentric PPI network diagram of common targets of active component of Houttuynia cordata and enteritis |
表2 核心靶点的拓扑参数Table 2 Topological parameters of core targets |
| 靶点 Targets | 度值 Degree value | 介数中心性 Betweenness centrality | 接近中心性 Closeness centrality |
|---|---|---|---|
| 白细胞介素6 IL6 | 65 | 592.292 7 | 0.780 7 |
| 丝氨酸/苏氨酸蛋白激酶1 AKT1 | 63 | 752.266 3 | 0.767 2 |
| 肿瘤坏死因子TNF | 63 | 619.484 4 | 0.767 2 |
| 表皮生长因子受体EGFR | 57 | 493.513 2 | 0.729 5 |
2.4 GO功能和KEGG通路富集分析
图4 GO功能富集分析柱形图Biological process:生物过程;Cellular component:细胞组分;Molecular function:分子功能;phosphorylation:磷酸化;protein phosphorylation:蛋白质磷酸化;signal transduction:信号转导;response to xenobiotic stimulus:对外源刺激的反应;positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction:磷脂酰肌醇3-激酶/蛋白激酶B信号转导的正调控;protein autophosphorylation:蛋白质自磷酸化;positive regulation of cell migration:细胞迁移的正调控;cell surface receptor protein tyrosine kinase signaling pathway:细胞表面受体蛋白酪氨酸激酶信号通路;multicellular organism development:多细胞生物发育;cellular response to reactive oxygen species:细胞对活性氧的正调控;plasma membrane:质膜;membrane raft:膜筏;receptor complex:受体复合物;cytosol:细胞溶质;cell surface:细胞表面;cytoplasm:细胞质;neuronal cell body:核内体;phosphatidylinositol 3-kinase complex, class ⅠA:磷脂酰肌醇3-激酶复合物ⅠA类;focal adhesion:聚焦黏附;protein-containing complex:蛋白质包涵体;ATP binding:ATP结合;protein tyrosine kinase activity:蛋白酪氨酸激酶活性;kinase activity:激酶活性;protein kinase activity:蛋白质激酶活性;identical protein binding:同一蛋白质结合;transmembrane receptor protein tyrosine kinase activity:膜受体蛋白酪氨酸激酶活性;protein serine kinase activity:蛋白丝氨酸激酶活性;enzyme binding:酶结合;protein phosphatase binding:蛋白质磷酸酶结合;protein binding:蛋白质结合。 Fig.4 GO function enrichment analysis bar chart |
图5 KEGG通路富集分析气泡图Pathways in cancer:癌症通路;EGFR tyrosine kinase inhibitor resistance:表皮生长因子受体酪氨酸激酶抑制性耐药;Endocrine resistance:内分泌抵抗;PI3K-Akt signaling pathway:磷脂酰肌醇3-激酶-蛋白激酶B信号通路;Kaposi sarcoma-associated herpesvirus infection:卡波西肉瘤相关疱疹病毒感染;Non-small cell lung cancer:非小细胞肺癌;Prostate cancer:前列腺癌;Proteoglycans in cancer:癌症蛋白质聚糖;Hepatitis B:乙型肝炎;Central carbon metabolism in cancer:癌症的中心碳代谢;Human cytomegalovirus infection:人类巨细胞病毒感染;Pancreatic cancer:胰腺癌;AGE-RAGE signaling pathway in diabetic complications:糖尿病并发症中的糖基化终产物及其受体信号通路;Chemical carcinogenesis-receptor activation:化学致癌-受体激活;HIF-1 signaling pathway:缺氧诱导因子1信号通路;PD-L1 expression and PD-1 checkpoint pathway in cancer:癌症PD-L1表达及PD-1核查点通路;Prolactin signaling pathway:催乳素信号通路;TNF signaling pathway:肿瘤坏死因子信号通路;Glioma:胶质瘤;Lipid and atherosclerosis:脂质与动脉粥样硬化。 Fig.5 KEGG pathway enrichment analysis bubble plot |
2.5 鱼腥草活性成分-肠炎靶点-信号通路网络分析
图6 鱼腥草活性成分-肠炎靶点-信号通路网络图仅注释主要靶点 only annotate the main targets。Houttuynia cordata:鱼腥草;MOL003851:异热马酮 isoramanone;MOL000422:山奈酚 kaempferol;MOL004345:1-甲基-2-九壬基-4-喹诺酮 1-methyl-2-nonacosyl-4-quinolone;MOL004350:黄夹次苷丙 ruvoside_qt;MOL004355:波菜甾醇 spinasterol;MOL000098:槲皮素 quercetin;MOL000415:芦丁 rutin;MOL001955:绿原酸 chlorogenic acid;MOL004359:鱼腥草素 houttuynin;IL6:白细胞介素6 interleukin 6;AKT1:丝氨酸/苏氨酸蛋白激酶1 serine/threonine-protein kinase 1;TNF:肿瘤坏死因子tumor necrosis factor;EGFR:表皮生长因子受体epidermal growth factor receptor;STAT3:信号转导和转录激活因子3 signal transducer and activator of transcription 3;PI3K-Akt signaling pathway:磷脂酰肌醇3-激酶-蛋白激酶B信号通路 phosphatidylinositol 3-kinase/protein kinase B signaling pathway;TNF signaling pathway:肿瘤坏死因子信号通路 tumor necrosis factor signaling pathway;Enteritis:肠炎。 Fig.6 Active components of Houttuynia cordata-enteritis targets-signaling pathways network diagram |
2.6 活性成分和关键靶点的分子对接
图7 鱼腥草活性成分与核心靶点分子对接结合能热图IL6:白细胞介素6 interleukin 6;AKT1:丝氨酸/苏氨酸蛋白激酶1 serine/threonine-protein kinase 1;TNF:肿瘤坏死因子 tumor necrosis factor;EGFR:表皮生长因子受体 epidermal growth factor receptor。 Fig.7 Heat map of molecular docking binding energy of core targets with active components of Houttuynia cordata |
