1 材料与方法
1.1 试验设计
表1 甘蔗梢青贮酶菌混合正交设计Table 1 Orthogonal design of bacteria and enzymes mixture of sugarcane top silage |
| 项目 Items | 添加水平 Supplemental level | ||
|---|---|---|---|
| 1 | 2 | 3 | |
| 植物乳杆菌 Lactobacillus plantarum/(CFU/g) | 1×105 | 1×106 | 1×107 |
| 戊糖片球菌 Pediococcus pentosaceus/(CFU/g) | 1×105 | 1×106 | 1×107 |
| 纤维素酶 Cellulase/(U/g) | 1×104 | 2×104 | 3×104 |
| 木聚糖酶 Xylanase/(U/g) | 1×104 | 2×104 | 3×104 |
| 葡萄糖氧化酶 Glucose oxidase/% | 0.1 | 0.2 | 0.3 |
表2 甘蔗梢青贮体外瘤胃发酵试验设计Table 2 Experimental design of in vitro rumen fermentation of sugarcane top silage |
| 项目 Items | 组别 Groups | ||||||
|---|---|---|---|---|---|---|---|
| T1 | T2 | T3 | T4 | T5 | T6 | ||
添加水平 Supplemental level | 植物乳杆菌 Lactobacillus plantarum | 3 | 3 | 1 | 1 | 1 | 1 |
| 戊糖片球菌 Pediococcus pentosaceus | 2 | 1 | 3 | 2 | 3 | 1 | |
| 纤维素酶 Cellulase | 1 | 3 | 2 | 2 | 3 | 3 | |
| 木聚糖酶 Xylanase | 3 | 2 | 2 | 2 | 3 | 3 | |
| 葡萄糖氧化酶 Glucose oxidase | 1 | 3 | 1 | 2 | 3 | 2 | |
1.2 体外瘤胃发酵
1.3 样品采集
1.4 指标检测
1.4.1 DMD
DMD(%)=[(样品中DM含量-降解后
残渣中DM含量)/样品中DM含量]×100。
1.4.2 发酵参数
1.4.3 微生物多样性
1.5 数据统计
2 结果
2.1 不同酶菌混合添加对甘蔗梢青贮体外瘤胃发酵参数的影响
表3 不同酶菌混合添加对甘蔗梢青贮体外瘤胃发酵参数的影响Table 3 Effects of mixed addition of different enzymes and bacteria on in vitro rumen fermentation parameters of sugarcane top silage |
| 项目 Items | 组别 Groups | P值 P-value | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| T1 | T2 | T3 | T4 | T5 | T6 | ||||||||||
| 干物质消化率 DMD/% | 50.59 ±1.68 | 49.03 ±1.28 | 49.84 ±1.03 | 49.17 ±1.53 | 51.36 ±1.98 | 49.72 ±1.01 | 0.146 | ||||||||
| 产气量 Gas/(mL/g) | 126.20 ±2.95d | 127.60 ±2.07d | 134.00 ±2.45a | 133.6 ±1.95ab | 130.80 ±1.10bc | 128.80 ±2.68cd | <0.001 | ||||||||
| 氢气 H2/(mL/g) | 3.96 ±0.35c | 3.06 ±0.38d | 8.26 ±0.81a | 7.47 ±0.86b | 4.50 ±0.23c | 4.58 ±0.26c | <0.001 | ||||||||
| 甲烷 CH4/(mL/g) | 26.66 ±2.40 | 27.99 ±0.56 | 28.09 ±2.85 | 28.91 ±1.34 | 26.97 ±2.74 | 26.52 ±1.08 | 0.384 | ||||||||
| pH | 5.83 ±0.04a | 5.82 ±0.03ab | 5.75 ±0.04abc | 5.60 ±0.14c | 5.63 ±0.18bc | 5.65 ±0.20bc | 0.026 | ||||||||
| 乙酸 AA /(mmol/L) | 18.31 ±0.37c | 18.46 ±0.43c | 19.02 ±0.77c | 21.26 ±1.57b | 26.62 ±2.34a | 25.42 ±0.95a | <0.001 | ||||||||
| 丙酸 PA/(mmol/L) | 20.34 ±0.13 | 20.17 ±0.32 | 19.83 ±0.30 | 20.15 ±0.91 | 19.98 ±0.81 | 19.97 ±0.39 | 0.742 | ||||||||
| 丁酸 BA/(mmol/L) | 6.31 ±0.15 | 6.20 ±0.15 | 6.09 ±0.28 | 6.35 ±0.83 | 6.00 ±0.26 | 5.94 ±0.13 | 0.490 | ||||||||
| 总挥发性脂肪酸 TVFA/(mmol/L) | 44.96 ±0.61c | 44.82 ±0.60c | 44.93 ±0.76c | 47.76 ±2.94b | 52.61 ±2.84a | 51.34 ±1.28a | <0.001 | ||||||||
| 氨态氮 NH3-N/(mg/dL) | 39.49 ±2.30ab | 39.11 ±4.93ab | 33.64 ±3.80bc | 33.61 ±4.51bc | 41.41 ±1.32a | 28.28 ±3.82c | 0.001 | ||||||||
同行数据肩标无字母或相同字母表示差异不显著(P>0.05),不同小写字母表示差异显著(P<0.05)。下表同。 | |
In the same row, values with no letter or the same letter superscripts mean no significant difference (P>0.05), while with different small letter superscripts mean significant difference (P<0.05). The same as below. |
2.2 不同酶菌混合添加对甘蔗梢青贮体外瘤胃发酵微生物组成的影响
2.2.1 α多样性指数
表4 α多样性指数Table 4 Alpha diversity indexes |
| 项目 Items | 组别 Groups | P值 P-value | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| T1 | T2 | T3 | T4 | T5 | T6 | |||||||||
| Sobs指数 Sobs index | 2.21 ±0.13a | 2.15 ±0.13ab | 2.28 ±0.06a | 2.00 ±0.06b | 2.14 ±0.14ab | 2.17 ±0.17ab | 0.040 | |||||||
| Chao1指数 Chao1 index (×103) | 2.64 ±0.12 | 2.57 ±0.13 | 2.67 ±0.06 | 2.41 ±0.08 | 2.52 ±0.15 | 2.59 ±0.21 | 0.064 | |||||||
| Ace指数 Ace index (×103) | 2.71 ±0.14 | 2.63 ±0.14 | 2.76 ±0.07 | 2.47 ±0.09 | 2.61 ±0.16 | 2.67 ±0.23 | 0.071 | |||||||
| Shannon指数 Shannon index | 5.36 ±0.28 | 5.31 ±0.38 | 5.55 ±0.22 | 5.00 ±0.26 | 5.13 ±0.42 | 5.29 ±0.34 | 0.174 | |||||||
| Simpson指数 Simpson index | 0.04 ±0.01 | 0.04 ±0.02 | 0.03 ±0.01 | 0.06 ±0.02 | 0.05 ±0.03 | 0.04 ±0.02 | 0.426 | |||||||
| Coverage指数 Coverage index | 98.68 ±0.08 | 98.74 ±0.07 | 98.69 ±0.06 | 98.78 ±0.06 | 98.75 ±0.08 | 98.69 ±0.14 | 0.407 | |||||||
2.2.2 Venn图
2.2.3 门水平上的微生物组成
图2 门水平上的微生物相对丰度分布图Firmicutes:厚壁菌门;Bacteroidota:拟杆菌门;Verrucomicrobiota:疣微菌门;Proteobacteria:变形菌门;Spirochaetota:螺旋体门;Patescibacteria:髌骨菌门;Cyanobacteria:蓝细菌门;Others:其他。 Fig.2 Relative abundance distribution map of microbiota at phylum level |
表5 不同酶菌混合添加对甘蔗梢青贮体外瘤胃发酵微生物相对丰度的影响Table 5 Effects of mixed addition of different enzymes and bacteria on relative abundances of microbiota in in vitro rumen fermentation of sugarcane top silage% |
| 项目 Items | 组别 Groups | P值 P-value | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| T1 | T2 | T3 | T4 | T5 | T6 | ||||||||||
| 门水平 Phylum level | 厚壁菌门 Firmicutes | 46.32 ±4.62bc | 45.50 ±2.52bc | 42.77 ±2.88c | 50.91 ±0.74a | 48.09 ±1.92ab | 45.61 ±2.90bc | 0.004 | |||||||
| 拟杆菌门 Bacteroidota | 39.36 ±1.29a | 40.55 ±2.46a | 41.39 ±1.68a | 29.62 ±1.88c | 34.28 ±2.83b | 36.06 ±2.60b | <0.001 | ||||||||
| 疣微菌门 Verrucomicrobiota | 5.88 ±0.66cd | 5.50 ±0.43d | 5.37 ±1.19d | 7.42 ±0.37ab | 7.78 ±0.29a | 6.75 ±0.92bc | <0.001 | ||||||||
| 螺旋菌门 Spirochaetota | 3.30 ±0.27c | 3.60 ±0.27c | 3.94 ±0.96c | 6.31 ±0.45a | 4.84 ±0.57b | 5.95 ±0.52a | <0.001 | ||||||||
| 普雷沃氏菌门 Proteobacteria | 1.28 ±0.24b | 1.15 ±0.10b | 1.18 ±0.12b | 1.51 ±0.16a | 1.23 ±0.12b | 1.24 ±0.12b | 0.015 | ||||||||
| 属水平 Genus level | 琥珀酸菌属 Succiniclasticum | 22.87 ±1.11c | 21.78 ±0.91c | 19.24 ±0.59d | 29.75 ±1.38a | 27.56 ±2.26b | 23.61 ±1.77c | <0.001 | |||||||
| 理研菌科RC9 肠道群 Rikenellaceae_ RC9_gut_group | 14.02 ±0.48b | 16.08 ±1.37a | 11.59 ±0.73c | 9.82 ±1.04d | 13.15 ±1.47b | 11.34 ±0.46c | <0.001 | ||||||||
| 未定级F082 Norank_f_F082 | 13.53 ±1.12ab | 13.60 ±0.41a | 13.14 ±0.52ab | 9.80 ±1.11c | 12.03 ±0.98b | 13.02 ±1.70ab | <0.001 | ||||||||
| 普雷沃氏菌属 Prevotella | 7.56 ±0.88b | 6.71 ±0.53b | 18.14 ±0.86a | 6.92 ±0.42b | 5.32 ±0.31c | 7.27 ±0.87b | <0.001 | ||||||||
| 未定级WCHB1-41 Norank_f_norank_o_ WCHB1-41 | 3.15 ±0.08c | 3.42 ±0.37c | 3.08 ±0.38c | 4.94 ±0.58b | 5.72 ±0.57a | 4.53 ±0.75b | <0.001 | ||||||||
| 反刍杆菌属 Ruminobacter | 2.60 ±0.15d | 2.84 ±0.31cd | 3.20 ±0.48c | 5.38 ±0.36a | 4.41 ±0.47b | 5.44 ±0.44a | <0.001 | ||||||||
| 克里斯滕森菌科 R-7群 Christensenellaceae_ R-7_group | 1.92 ±0.08ab | 2.15 ±0.30a | 1.96 ±0.19a | 1.64 ±0.25b | 1.98 ±0.30a | 1.93 ±0.11ab | 0.042 | ||||||||
| 未定级vadinBE97 Norank_f_vadinBE97 | 2.35 ±0.29a | 1.45 ±0.28c | 1.63 ±0.21c | 1.96 ±0.25b | 1.61 ±0.23c | 1.65 ±0.13bc | <0.001 | ||||||||
| 未定级UCG-011 Norank_f_UCG-011 | 1.83 ±0.19a | 1.42 ±0.21b | 1.68 ±0.18ab | 1.50 ±0.19b | 1.55 ±0.37ab | 1.84 ±0.13a | 0.031 | ||||||||
| NK4A214群 NK4A214_group | 1.44 ±0.21 | 1.51 ±0.38 | 1.57 ±0.56 | 1.26 ±0.10 | 1.48 ±0.11 | 1.45 ±0.09 | 0.681 | ||||||||
2.2.4 属水平上的微生物组成
图3 属水平上的微生物相对丰度分布图Succiniclasticum:琥珀酸菌属;Rikenellaceae_RC9_gut_group:理研菌科RC9肠道群;norank_f_F082:未定级F082;Prevotella:普雷沃氏菌属;norank_f_norank_o_WCHB1-41:未定级WCHB1-41;Ruminobacter:反刍杆菌属;Christensenellaceae_R-7_group:克里斯滕森菌科R-7群;norank_f_vadinBE97:未定级vadinBE97;norank_f_UCG-011:未定级UCG-011;NK4A214_group:NK4A214群;Saccharofermentans:糖发酵菌属;Sphaerochaeta:球孢菌属;Candidatus_Saccharimonas:暂定种糖单孢菌属;norank_f_norank_o_Clostridia_UCG-014:未定级梭菌目UCG-014;norank_f_norank_o_Gastranaerophilales:未定级嗜胃肠厌氧目;norank_f_Bacteroidales_UCG-001:未定级拟杆菌目UCG-001;Eubacterium_ruminantium_group:瘤胃真杆菌属反刍动物群;Others:其他。 Fig.3 Relative abundance distribution map of microbiota at genus level |
2.3 体外瘤胃发酵参数与属水平微生物相对丰度的相关性分析
图4 体外瘤胃发酵参数与属水平微生物相对丰度的相关性热图DMD:干物质消化率 dry matter digestibility;Gas:产气量 gas production;H2:氢气 hydrogen;CH4:甲烷 methane;AA:乙酸 acetic acid;PA:丙酸 propionic acid;BA:丁酸 butyric acid;TVFA:总挥发性脂肪酸 total volatile fatty acids;NH3-N:氨态氮 ammonia nitrogen;Lachnospiraceae_NK3A20_group:毛螺菌科NK3A20群;norank_f_norank_o_Clostridia_UCG-014:未定级梭菌目UCG-014;Candidatus_Saccharimonas:暂定种糖单孢菌属;Sphaerochaeta:球孢菌属;Saccharofermentans:糖发酵菌属;NK4A214_group:NK4A214群;norank_f_UCG-011:未定级UCG-011;norank_f_vadinBE97:未定级vadinBE97;Christensenellaceae_R-7_group:克里斯滕森菌科R-7群;Ruminobacter:反刍杆菌属;norank_f_norank_o_WCHB1-41:未定级WCHB1-41;Prevotella:普雷沃氏菌属;norank_f_F082:未定级F082;Rikenellaceae_RC9_gut_group:理研菌科RC9肠道群;Succiniclasticum:琥珀酸菌属;Others:其他。 *代表显著相关(P<0.05),**代表极显著相关(P<0.01)。* represented significant correlation (P<0.05), and ** represented extremely significant correlation (P<0.01). Fig.4 Correlation heatmap between in vitro rumen fermentation parameters and relative abundances of microbiota at genus level |
